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support needed: if ALT is base-level identical across samples from a muli-sample vcf generated by sniffles2?

6

For the output from combined calling, sniffles2 will provide an actual sequence in the ALT column for nearly every SV, except for a few symblic ALT representations. Does this imply...

support for .csi of vcf indexes

1

Hi vcflib developer, Thank you all for offering such a multi-purpose tool. However, I recently faced a problem that seems because vcflib doesn't support csi index of vcf. As [this...

It seems the flag --chr is unoptional. If I run xpclr chromosome by chromosome, are the xpclr values from different chr comparable? In other words, what should I do to...