Maxime Lévesque

Error with sbt 0.11

3

With SBT 0.11 I get : $ sbt11 C:\Users\Maxou.sbt\plugins\build.sbt:4: error: illegal start of simple expression object MyPlugins extends Build { ^ [error] Error parsing expression. Ensure that there are no...

GIT tag (or commit ID) on releases

4

I am currently looking at a bug that was reported fixed in release 1.13.4, by a pull request I have submitted. By looking at the stack trace in the logs,...

Pileup emits HTTP requests to a bigbed with invalid header : Range:bytes=9074145-NaN

2

This JSFiddle illustrates the problem : https://jsfiddle.net/maxl/srx4qecL/4/ In the chrome debug/network console, I see a few successful http requests to the bigbed, and eventually there is a request with the...

I get the following crash when importing pssh.clients.SSHClient ``` python3 Python 3.9.16 (main, Jan 11 2023, 16:05:54) [GCC 11.2.0] :: Anaconda, Inc. on linux Type "help", "copyright", "credits" or "license"...

Booting on a USB drive

6

I have tried to get HifiberrOS to boot from a USB ssd, using a variation of this recipe: https://www.tomshardware.com/how-to/boot-raspberry-pi-4-usb#:~:text=Launch%20Raspberry%20Pi%20Imager%20and,to%20open%20the%20next%20menu.&text=4.,us%20to%20the%20main%20menu. 1. installed and configured a HifiberyOS instance on an SD card...

Question: are output rows guaranteed to be grouped by 1st TSV row (query ids) ?

1

Suppose I have the following matches for query sequences A and B, is it possible that diamond writes output like follows (where matches for A are NOT consecutive): ``` A...

only one slurm node is working when using diamond "--multiprocessing" with many nodes

3

I am trying to launch a diamond blast on large fasta files with "--multiprocessing" , and I am not able to get diamond to use more than 1 node. Is...

Error (or misunderstanding on my part) in the documentation, in the SLURM example

1

In the following example: https://github.com/bbuchfink/diamond/wiki/6.-Distributed-computing There seems to be a contradicting slurm configuration between --ntasks-per-node=1 and --ntasks-per-core=2 ``` #!/bin/bash -l #SBATCH -D ./ #SBATCH -J DIAMOND #SBATCH --mem=185000 #SBATCH --nodes=520...

ssh2.exceptions.PublickeyUnverifiedError

1

I have have an rsa key that works the ssh program running from a shell (ssh -i myKey me@myhost) When connecting with pssh, I get this exception: ``` Traceback (most...

Could SearchGUI write somewhere else than in SearchGUI-4.2.8/resources/(conf | temp) ?

14

SearchGUI writes temp files and configurations in sub directories of : public String getJarFilePath() { return CompomicsWrapper.getJarFilePath(this.getClass().getResource("SearchGUI.class").getPath(), "SearchGUI"); } https://github.com/compomics/searchgui/blob/master/src/main/java/eu/isas/searchgui/cmd/SearchCLI.java#L359 It poses a few problems: 1. To run from a...