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Digital Organism Simulation Environment (DOSE)
Suppose reactions with corresponding reactant-product tuples are given. ``` >>> reactions = [[('M73', 'M293'), ('M128', 'M175'), ('M156', 'M54'), ('M257', 'M167'), ('M98', 'M15'), ('M184', 'M56'), ('M204', 'M19'), ('M157', 'M253')]] >>> G...
In our philosophical paper, we need to know if computational mutation operators are good representation of biological mutations. Single mutation is easy to explain and argue for but repeated mutations...
Returns a list of an entire generation's status. User is able to specify the starting time of the simulation, the name of the population, the generation to analyze and the...
1. Needs to devlop a wiki page on the different parts of writing a simulation. 2. Four parts are needed -- imports -- simulation parameters -- simulation functions -- executor