mattloose

Store logs as compressed files

4

The log files become very large very quickly - compression should be used!

modkit pileup filter-threshold results in different calls

5

Hi, As I understand it modkit pileup defaults to calculating a threshold for calling methylation based on the input data. In some circumstances this can lead to different methylation calls...

# Issue Report ## Please describe the issue: Cannot run dorado correct without triggering a memory issue - using A100 GPUs with 80Gb memory. Error message is: RuntimeError: CUDA out...

If users are running in-built native adaptive sampling we should warn them that running readfish along side is a bad idea. We should possibly stop them from doing it all...