mattloose

Preprocessing reads is painful.

4

The preprocessing reads step is taking a very long time for large runs. > preprocessing reads: 1%|1 | 96/14384 [04:35

config.ini

2

Please can you provide documentation on how to specify a config.ini file or equivalent for reference genomes other than the recommended download. The software appears hardcoded to expect chromosomes labelled...

faqtory rich requirment clashes with textual

2

I don't think it's possible to use faqtory in a textual app due to conflicting rich requirements.

runid in bam != fastq

2

Hi, In the version of dorado currently in MinKNOW (Guppy 7.1.4) the runID reported in the BAM fileis not the same as the runid reported in the fastq file. In...

Reports of unbarcoded reads being returned

2

Hi, We have had a user report occasional reads in a barcoded run not receiving a barcode label - i.e they do not get labelled as unclassified they simply have...

As of MinKNOW 5.9 there is a change in how unblocks will be handled. To address this we should implement: ```[tasklist] ### Tasks - [x] Detect MinKNOW version on launch...

If a badly formatted bed file is supplied as part of a toml_live update the update fails and the original bed file is used. However, the user is not nitified...

As raised in #336 we do not capture every possible use case for readfish in our example tomls - we could provide some further exposition on this subject.