Mathieu Boudreau, PhD
Mathieu Boudreau, PhD
> One question, while using the CLI command to download the models, should we create destination folder if the destination folder is non existent? Yup
Stale PR, closing.
The segmentation problem also occurs when simply running the CLI, so it may be both
@Stoyan-I-A mentioned in our meeting that the loading might be on the IVADOMED side, so I'll check and if so open an issue in IVADOMED and fix it there
After a bit of exploring, I finally figured out the issue and likely solution. The problem is on the IVADOMED, not ADS. Using AxonDeepSeg's imread and imwrite, loading a 16b...
So the IVADOMED side (segmentation) of 16 bit images are fixed now with the latest version of IVADOMED, but napari doesn't show loaded 16b images properly still (see https://github.com/ivadomed/ivadomed/pull/1296#issuecomment-1850390124). @Stoyan-I-A...
Here's the 16 bit file: https://drive.google.com/file/d/1rNIvr-RtQnlidL1J3O96g_d1D22QsEW5/view?usp=sharing It's too big to be shared here as an attachment. I've quickly checked and didn't see any issue about viewer issues with 16 bit...
Is there any way for us to "intercept" images that are loaded so we can do a conversion to 8bit ourselves before it gets displayed? Or, add a button to...
Is there a preference between getting a testimonial from senior authors / PIs, or the lead author that actually used it?
>The link to the gform was kept on SCT website, we should do the same for ADS. We don't have an AxonDeepSeg website; we could either keep somewhere in a...