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Published 20 hours ago • verified publisher icon materialsvirtuallab

BayesianOptimizer.optimize() too verbose

Open janosh opened this issue 1 year ago • 0 comments

The output from BayesianOptimizer.optimize() is very verbose. It prints thousands of progress bars which leads to log files so large they cause problems on HPC file system.

example logs

The full file is MBs of this unreadable output.


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wandb: 429 encountered (Filestream rate limit exceeded, retrying in 2.443442183019749 seconds), retrying request
wandb: 429 encountered (Filestream rate limit exceeded, retrying in 4.28849482191237 seconds), retrying request

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wandb: 429 encountered (Filestream rate limit exceeded, retrying in 2.210994058447385 seconds), retrying request
wandb: 429 encountered (Filestream rate limit exceeded, retrying in 4.669795294411053 seconds), retrying request

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wandb: 429 encountered (Filestream rate limit exceeded, retrying in 8.908552701687848 seconds), retrying request

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wandb: 429 encountered (Filestream rate limit exceeded, retrying in 2.1695016392664876 seconds), retrying request
wandb: 429 encountered (Filestream rate limit exceeded, retrying in 4.278354591854076 seconds), retrying request

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wandb: 429 encountered (Filestream rate limit exceeded, retrying in 2.032027459931139 seconds), retrying request
wandb: 429 encountered (Filestream rate limit exceeded, retrying in 4.030663661961865 seconds), retrying request

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...

Would be nice if there was a verbose kwarg to control/silence the optimize() method.

For now, I'm using the contextlib.redirect_stdout() manager to send everything to /dev/null. Maybe someone has a less clunky temp workaround?

import contextlib
import os

from maml.apps.bowsr.model.megnet import MEGNet
from maml.apps.bowsr.optimizer import BayesianOptimizer
from pymatgen.core import Structure

model = MEGNet()

structure = Structure.from_file("cubic_perovskite.cif")

bayes_optimizer = BayesianOptimizer(model=model, structure=structure)
bayes_optimizer.set_bounds()

with open(os.devnull, "w") as devnull, contextlib.redirect_stdout(devnull):
    bayes_optimizer.optimize(n_iter=100, n_init=100)

janosh avatar Sep 22 '22 04:09 janosh