Nico Matentzoglu
Nico Matentzoglu
In the huddle this week we talked a bit about the differences between mappings, cross-references and linkouts. The time has come to develop an air-tight datamodel for this, and align...
``` grep 'id: UMLS:.*[^A-Z0-9].*' sources/medgen/medgen.obo > medgen_ids.txt ``` Results in ids like: ``` id: UMLS:(D-Ala(2))-deltorphin-I id: UMLS:(DL)-3,7-dihydro-1,8-dimethyl-3-(2-methylbutyl)-1H-purine-2,6-dione id: UMLS:(VIP-neurotensin) hybrid antagonist id: UMLS:1-ethyl-2-((1,4-dimethyl-2-phenyl-6-pyrimidinylidene)methyl)quinolinium chloride id: UMLS:1-ethynylpyrene id: UMLS:1-hexacosanol ``` There...
During our integration of GARD we encountered 242 GARD ids that map to more than one Mondo ID. This means that, Mondo decided to "lump", while GARD favours a "split"....
## Context - https://github.com/monarch-initiative/mondo/issues/4524#issuecomment-1050110642_ - https://github.com/EBISPOT/ols4/issues/167
The following 5 Decipher CNV syndromes (https://www.deciphergenomics.org/disorders/syndromes/list) are not in Mondo: Potential Mondo ID | Decipher name | Decipher ID -- | -- | -- MONDO:0010763 ??? | [DECIPHER: AZFa]...
Remaining problem: this kills two axiom injections: ``` SubClassOf( ) SubClassOf( ) ```
You have a class obsolete Sparse and thin eyebrow and replaced it by two classes. (sparse eyebrow and thin eyebrow). This is not legal and will confuse algorithms that try...
Because of the switch to protege we see the issue coming up more frequently that inSubset points to a string rather than an annotation property IRI. QC.