Nico Matentzoglu

For instructions see https://mapping-commons.github.io/sssom/spec-formats-tsv/#rules-for-the-metadata-block The first issue that springs to the eye is: schema order should be used, _not_ alphabetical (which is the case now).

Ensure quality checking is run by `make test`

7

Too many quality checks are not being run by GitHub actions.. See https://github.com/obophenotype/uberon/issues/1968 Need to re-instate.

Resolves [#ISSUE, #ISSUE] - [ ] `docs/` have been added/updated if necessary - [ ] `make test` has been run locally - [ ] tests have been added/updated (if applicable)...

Proposal for Bioregistry SOP: "No manual registration of OBO URI prefixes"

3

Some [context](https://github.com/biopragmatics/bioregistry/pull/1175#issuecomment-2417053823). I would like to suggest the following addition to the bioregistry SOP: > OBO URI prefixes such as `http://purl.obolibrary.org/obo/ABC_` are automatically synchronised with the [OBO Foundry metadata](https://obofoundry.org/registry/ontologies.yml) and...

Parking some stached files here for future

There are a handful of (IMO unnecessary) non-ASCII chars in biomappings, eg ``` CHEBI:202852 5-heptadeca-8′Z,11′Z,16-trienylresorcinol skos:exactMatch MESH:C511035 5-heptadeca-8'Z,11'Z,16-trienylresorcinol semapv:LexicalMatching https://creativecommons.org/publicdomain/zero/1.0/ https://github.com/biomappings/biomappings/blob/4324c1/scripts/import_gilda_mappings.py 0.95 ``` The back tick seems to have a...

After trying in vein to obsolete the class here: https://github.com/obophenotype/uberon/issues/3488 I now I guess need to either 1. Add it to COB or 2. Request some kind of temporary "exemption"...

Extend adapters to support versions

3

I am working with a great bioinformatician on a project which involves doing oaking with PHENIO and loading data from the Monarch KG (separately). PHENIO is large, and it frequently...