Nico Matentzoglu

Provide a jupyter cell that loads a kgx tar ball into KGX

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Provide a jupyter cell that loads a kgx tar ball into KGX and then shows how to 1) export it into RDF 2) load it into triple store 3) load...

Deploy KG OBO as blazegraph instance

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- Add blazegraph instance for all KG OBO - enable RDR for handling reifications properly as @cmungall suggests - All kgobo kgx should be loaded into blazegraph as a named...

I am doing https://oboacademy.github.io/obook/tutorial/exomiser-tutorial/ It seems the URL to the phenotype and variant databases dont work anymore: 2302_phenotype.zip is mentioned, but seems only 2402_phenotype.zip exists. https://data.monarchinitiative.org/exomiser/latest/index.html Can you fix the...

These mappings are not very precise. I just want to see how many complaints QC has.

Add test for OAK parsing and OBO validation of release product

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Precludes problems like #7579 in the future. This PR: 1. Runs a OBO validator over the _release product_ mondo.obo rather than just over the edit file (which is more important...

Is there any (single) place all these different matching algorithms you are using are documented? I would like to test some alternative similarity measures, as well as develop an approach...

``` [INFO] ------------------------------------------------------------------------ [INFO] Reactor Summary: [INFO] [INFO] owlsim ............................................. SUCCESS [ 1.848 s] [INFO] owlsim-core ........................................ FAILURE [ 5.273 s] [INFO] owlsim REST services ............................... SKIPPED [INFO] ------------------------------------------------------------------------ [INFO]...

Make the existence of a pattern a requirement for adding an Uberon term

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See #2515 for a bit on this, but the key is: Every term added to Uberon should be linked to a DOSDP pattern. It does not matter whether the DOSDP...

Start debugging guide for Uberon developers

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And add stuff like @gouttegd s perls of wisdom While I am here, note to my future self and to anyone attempting to debug unsatisfiability issues in composite-metazoan (or any...