Nico Matentzoglu
Nico Matentzoglu
The way this works is like this: 1. We cycle all mapping candidates through an ontology merging pipeline (KBoom). 2. This will reveal all mappings that cause contradictions. 3. These...
1000% I didnt not know that forks would execute workflows the same way! This particular one is totally irrelevant for forks. Happy to take a PR!
@cgchute is there anything like [this](https://bioportal.bioontology.org/ontologies/ICD10CM) for ICD11 to run some experiments for mapping?
I am not sure cc-ing someone on GitHub is possible :) but Can, if you see this, I would be happy to learn which file you recommend to get a...
@hrshdhgd you do not have to actually _do_ anything specific here, but you should understand how our work with boomer and disease mapping commons will automagically solve this issue. 1....
Requirement: https://github.com/monarch-initiative/mondo-ingest/issues/23
Extract MONDO:OMIM (rename OMIM to MONDO_OMIM) OUTER JOIN MONDO:ORDO (on MONDO) OUTER JOIN ORDO:OMIM (on ORDO) (rename OMIM to ORDO_OMIM)
@joeflack4 So we have concluded that we can obtain no new MONDO-ORDO mappings from the OMIM-ORDO mappings, right? If so, we can close this.
How can I get _new_ MONDO-Orphanet mappings from this table? (Mappings that were not previously there)?
Awesome - he last thing we need and the this is done from your perspective is the labels (mondo and orphanet) in this table - else it will take quite...