Marina

Results 27 issues of Marina

**Describe the bug** When I run the following code, the table that is returned does not include the complete list of `ophys_experiment_ids `for each `ophys_container_id`. It appears to require that...

bug
braintv

During SWDB, students have found a few `behavior_session_ids` that have `session_type` = NaN in the `behavior_sessions_table`. These `behavior_session_ids` are: [ 974152980, 974193154, 1000742242, 974328466, 944845655, 949292473, 954870355, 1094071961] with AllenSDK...

bug
behavior

AllenSDK 2.12.4 In the past, loading the `ophys_experiment_table `using the `from_lims `method of `VisualBehaviorOphysProjectCache `would return all available data in lims. Currently, it appears to be limited to the released...

bug
behavior
braintv

**Describe the bug** the function `calculate_reward_rate` from `allensdk.brain_observatory.behavior.trials_processing` returns incorrect values (all zeros) with Visual Behavior Neuropixels data because it lacks the requisite columns to calculate the reward rate value....

bug
behavior

**Describe the use case that is addressed by this feature.** Currently the names of the different stimulus blocks in the Visual Behavior Neuropixels dataset are designated by numbers = [0,1,2,3,4,5]....

enhancement
behavior
vbo
vbn

**Describe the bug** The `blank_duration_sec` value in the `task_parameters` attribute of the `BehaviorSessions` object appear to be incorrect for the TRAINING_0 and TRAINING_1 sessions. The `blank_duration_sec` is listed as [0.5,...

bug

starting from a fresh conda install, i get errors associated with `h5py`, `pytables`, and `umap` when i try to run VBA loading functions, so i believe they need to be...

There are 8 behavior sessions in the platform paper experiments table that do not have NWB files in the platform paper cache in the directory below, and don't download from...

Looks like something about the metadata may have changed with recent refactor? Or potentially is different for foraging2 than foraging? I use the stim_duration from the metadata in my analysis...

bug