marineLZ

> rfishbase::species(version = "19.04") Error in curl::curl_download(addr, dest = local_tbl) : Timeout was reached: [] Connection timed out after 10000 milliseconds

Sometimes， we want to know the version number of built-in tools

Got it. Thanks for your prompt reply and excellent work.

I see in this file that : multifractal/vibrant:0.5 multifractal/virfinder:0.2 As the lattest versions are Vibrant v1.2.1 and VirFinder v1.1, does this two version number matched?

想咨询一下这个计算丰度的原理是什么，如果基因1是在A样本中组装得到的，基因2在B样本组装得到的。那么得到的丰度结果A样本会有基因2的丰度值吗？还是直接就是0？

我可能没表达清楚。我意思是假设两个样本，不按共组装，按正常流程跑，单独组装得到两组contigs，然后第一个样本A的contigs有A1-A10 10个基因。第二个样本B有B1-B10 10个基因。这样算丰度B1-B10在A样本中的丰度会有是0 ？还是也会去映射得到具体值？（我看源代码貌似是前者，也就是只计算各自样本组装并预测得到的基因丰度）

嗯嗯，我就是这么操作的，分开了几组来跑。谢谢。