Marghoob Mohiyuddin

You should definitely switch to the AGE version I specified on abyzovlab.

Hi Ming Apologies for the late reply due to a combination of travels and other deadlines. The merging of overlapping calls from multiple files is implemented internally in MetaSV. You...

Hi @songtaogui what version of bedtools are you using? Do you have the complete log?

Hi Joel, Thanks for your interest in MetaSV. Do you get the same problems when compiling from the main AGE repository (https://github.com/abyzovlab/AGE)? Can you email me the logs or sample...

I did a bit of testing with the compiler flags. It seems that compiling without OpenMP supports works fine with -O3 option. Could you try `make OMP=no` and run the...

The OpenMP pragmas are fine. However, there may be a concurrency issue which pops up when the -O flags are used-this will require more investigation. However, for the time being,...

This is most likely a problem due to using the latest version of pyvcf. Please try using version 0.6.7 (https://pypi.python.org/pypi/PyVCF) and let me know how it goes. Thanks Marghoob. On...

@wjaratlerdsiri just checking if the suggestion worked for you.

Thanks @justin-mbca . Was this a change in the pyvcf package?