Marcus Stoiber

I have been able to reproduce this issue, but have yet to find a fix. Thank you for the data and reference! Will hopefully have a fix soon.

This is likely due to updates in pip recently (I have experienced similar issues as well). pip is moving to separated build systems from the setup.py file. This has impacts...

I'm not sure exactly how this tuple was extracted from the index file so it is hard to say what each attribute is defined. I would point out that RNA...

For the overwrite error, do you have write access to these reads? If not this error could be the result of you not being able to write back to the...

Yes all commands appear correct. The `tombo detect_modifications level_sample_compare` defaults to the KS-test and stored the effect size statistic by default (for the KS test this is the D-statistic). The...

This command does not accept gzipped input sequences. If you unzip the fastq file and retry the command it should work.

I'm not sure I understand exactly what is the expected behavior and what you are observing. Could you post the exact commands used, the expected output and the observed output?

What are the tombo commands you are using? In order to get fastq results into the FAST5 file you would need to use the preprocessing tombo command. What was the...

Could you post the full command and output text in order to help continue debugging this issue? The stuck resquiggle process is unlikely to be due to these attribute changes....

The searching issues could be caused by for example a circular loop of linked directories that tombo may be recursively searching. But given that the progress bar indicates the total...