marco91sol

PS. When I launch funannotate test -t predict --cpus 12 (for testing). It stops at the following point: **ERROR**: trainGlimmerHMM /prova_funannotate/test-predict_893adef5-6641-4a50-a392-ba7d66d8d50a/annotate/predict_misc/genome.softmasked.fa /prova_funannotate/test-p redict_893adef5-6641-4a50-a392-ba7d66d8d50a/annotate/predict_misc/glimmer.exons -d annotate/predict_misc/glimmerhmm

These are the values at the moment: MiB Mem : 515615.4 total, 239152.4 free, 109026.5 used, 167436.5 buff/cache MiB Swap: 0.0 total, 0.0 free, 0.0 used. 403300.1 avail Mem

It leaves me the following output: Chromosome with name: NW_001823611.1 does not exist Is it normal?

At the end, it worked even if there was the sentence "Chromosome with name: ... does not exist" But, in any case, I have some issues with other bam files....

No error. It only gives me this as output: """ Reading GTF file ... Done in 6.53447 seconds Parsing BAM files 0 reads processed in 9.5e-05 seconds Printing results Total...

At the moment, It's working... There were some issues with the **samtools sort** command. However, It provides the usual mistake " Chromosome with name: NW_020844013.1 does not exist". Neverthless it...