Marcel Martin

In case it helps: Some pictures of the board can be found at stefanbode/Sonoff-Tasmota#157 .

@SooLee In which way is it not working? I cloned the repo, removed `setup_requires`, ran these commands, and it worked: ``` python3 -m venv venv venv/bin/pip install cython venv/bin/pip install...

When running the program, run it with `venv/bin/hic2cool`. Alternatively, activate the virtual environment first with `source venv/bin/activate`, and then you can run it with `hic2cool`. This PR is just about...

I’m of course fine with this sitting here until you have more time.

> It looks like hic2cool bioconda package already exists. Yes, the package exists. I was reviewing the PR bioconda/bioconda-recipes#20462 and noticed that the `host` requirements section was unnecessarily long (these...

When judging whether seeds (not reads) are proper pairs, the above doesn’t quite work because we don’t know what the leftmost or rightmost mapped bases are going to be, mainly...

> This also suggest that we may be overfitting our optimization to high quality simulations without much variation. I am a bit worried about this. Doesn’t this fit the pattern...

> From what you told me, it should come with relatively little extra computation time since the same index can be used for read sets with different levels of variation...

Would that be a FASTA file with 100 concatenated genomes or something smaller with removed redundancies such as the nodes of a variation graph? Not sure if this play a...

I had to type this off from the screenshot, so I may have made a mistake, but are you sure this PR is better than 0.12.0? what | BWA-MEM |...