Running mitohifi using singularity

[aureliendejode]

Hello,

My cluster does not have docker but has singularity, so I am trying to use the singularity cmd:

singularity exec --bind /path/to/container_directory:/path/to/container_directory docker://ghcr.io/marcelauliano/mitohifi:master mitohifi.py -h

I am not familiar with singularity either so I am not sure what to put for the -bind option. --bind /path/to/container_directory:/path/to/container_directory ?

Do I need to download so image first ?

Thanks for your help

[aabaricalla]

Did you try

singularity build mitohifi.sif docker://ghcr.io/marcelauliano/mitohifi:master 

?? Then use

singularity shell -e mitohifi.sif mitohifi [opts] [files] 

Or

singularity exec mitohifi.sif mitohifi [opts] [files]