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`makeblastdb` output/error log is suppressed

Open davidlougheed opened this issue 1 year ago • 0 comments

Hello,

Thanks for your work on this tool. When running the docker container, BLAST querying fails due to a missing BLAST database (it was a Docker volume configuration issue on my end, but the issue is not about this.)

It would be helpful to receive output from the makeblastdb command, but instead everything is sent to /dev/null, and the status code is not even checked to see if there was an error:

subprocess.run(makeblastdb_cmd, stderr=subprocess.DEVNULL, stdout=subprocess.DEVNULL)

would it be possible to get this line changed so that I can properly debug this command instead of operating through guesswork?

davidlougheed avatar Nov 12 '23 15:11 davidlougheed