marcDabad

ADD recipe to CVLR software Paper: https://www.biorxiv.org/content/10.1101/2022.04.19.488395v2 Github: https://github.com/EmanueleRaineri/cvlr ----

JAFFAL pipeline crashes when singularity is used

5

### Description of the bug JAFFAL pipeline crashes when singularity is used because singularity container has not minimap2 (at least) ### Command used and terminal output ```console nextflow run nf-core/nanoseq--input...

jip bash -c "echo 'hello world'" -A StatG -q development -s Error while submitting job: sbatch: error: Batch job submission failed: Invalid feature specification Executed command: sbatch --wrap jip exec...

Command: ``` jip run --dry MethRep.jip -i test_files/all.mult_diff.map -r test_files/rmsk.clean.bed -b TEST ####################################################################################### | Pipeline Configuration | +--------------------------------+----------------------------------------------------+ | Name | Value | +================================+====================================================+ | input | test_files/all.mult_diff.map | |...

Compatible with albacore

2

It would be interesting to give compatibility with Albacore basecaller output