verkko
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marbl
Some recurrent complex patterns appears in HiFi graphs from chrX (see attached image). Explore what genomic structure is causing this. The ONT resolution currently fails because all paths are very...
In particular could diagnose potential issues related to ONT mapping artifacts.
Hello and thank you for the excellent tool. We have previously used verkko to generate a _de novo_ assembly using PB hifi reads, R10 ONT reads, and trios. We recently...
I am using R10 ONT data corrected with dorado（SUP）herro model to assemble the genome. Two jobs all stopped for error of 4-processONT. ont_resolved_graph.gfa.err 
Hello Verkko team, we are recently trying to test the nanopore-only T2T workflow with verkko on a r5.16xlarge instance. But from our observation, verkko persistently has a low utilization of...
Hi, I encountered an error in the very last step of `asm_sge/8-hicPipeline/final_contigs/8-hicPipeline/hic_scaff.sh` (not in `asm_sge/8-hicPipeline/hic_scaff.sh`! `asm_sge/8-hicPipeline/hic_scaff.sh` finished without error) hic_scaff.err ``` Traceback (most recent call last): File "/home/kogic/miniconda3/envs/verkko/lib/verkko/scripts/rdna_scaff.py", line 75,...
