metAMOS
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marbl
A metagenomic and isolate assembly and analysis pipeline built with AMOS
Whenever I try to select Prokka as a tool for finding ORFs, MetAMOS uses FragGeneScan. After reviewing the code of `runPipeline`, `findorfs.py` and `findscforfs.py` I found out that prokka is...
Hi all, Without getting any help with the previous problem, trying my luck on another problem that getting on the postinstall process: I'm trying to get a successful run of...
Hi all, I am trying to install metAMOS on CentOS 6.5, after installing all the program and dependencies guide suggesting to check if the program is installed well. To do...
Hi I am trying to use the metamos software to analyse some pacbio data. When I try to run the pipeline I get this message: Starting Task = preprocess.PREPROCESS **\*...
Dear authors, IDBA-UD within metAmos doesn't seem to use multiple libraries when running the assembly. In the command log: ``` idba_ud --out idba-ud.31.asm --num_threads 8 --read /home/snarayanasamy/Work/metAmosAnalysis/D36_metAmos-IDBAUD/Preprocess/out/lib1.fasta --maxk 100 --pre_correction...
Hey Guys, Thanks for helping me out with my previous issue, the current one comes after running the pipeline successfully (awesome btw). I use the functional annotation with blast, and...
Hi, I have run the pipeline for several of my sample individually. Now I am intend to do comparative analysis. Which script I could you to do comparative analysis? Where...
Dear metAMOS developers, I am having an error about "initpipeline" I hope you can help me finding the solution. Thank you for your attention James Version as follows：drwxr-xr-x. 3 root...
Hello. Sorry for give you questions several times. I got an error in soapdenovo2 assembly step. The soapdenovo2 ran out of memory in last post but at this time I...
Hi metAMOS team, I had a question about how the reference genome is determined. I have a bacterial genome, but it is pulling back Abaca_bunchy_top_virus as the best reference. At...
