metAMOS

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Hello! I have debian 8, 40Gb ram and java version "1.7.0_261" perl 5, version 20, subversion 2 (v5.20.2) Python 3.6.5 :: Anaconda, Inc. R version 3.5.3 (2019-03-11) -- "Great Truth"...

Mewgia

metAMOS INSTALL.py error

3

I tried running "python2 INSTALL.py core" and fails with the following last few lines. One difference compared to instruction on the manual was that I had to run with python2...

fangyuanchang

REAPR

8

Hi, Been running the pipeline and get the following error for FRCBAM and REAPR, however I'm mostly interested in REAPR and can't quite find out the problem. It is installed...

Dangoh

Hi, I am attempting to run metAMOS on a 2x150bp dataset containing ~60million reads, submitting to a remote cluster using PBS. I've tried various levels of memory (250gb to 850gb),...

kspeeriful

MetAMOS error "std::bad_alloc" during scaffold.SCAFFOLD

5

Hi MetAmos Guys, I'm using metAMOS 1.5rc3 and am getting an error at the SCAFFOLD step. Any recommendations as to what to try? The tests on install passed this step,...

drewmicro

Troubles with a Docker implementation of iMetAMOS

2

Hi Sergey and metAMOSTeam! We are working on putting together imetAMOS from the next Docker: https://hub.docker.com/r/ml642810/metamos/ We already found that we need to include the workflow in enabled.ini and that...

aldembert

**ERROR** All input sequences were empty

4

Hello, I am trying to align metagenomic sequences, when I run initPipeline with the following command I get the expected output: `initPipeline -q -1 Unmapped.out.mate1 -d projectDir -i 300:800` Project...

kvaldez

not recognizing changes to parameters

2

I'm running metAMOS as a job submission (via PBS job script) to a computer cluster. However, _runPipeline_ always runs the default parameters, no matter what parameters I change. For example,...

eam12

ChunfangZheng

Error when running run_pipeline_test.sh (FragGeneScan, exit code -11)

1

Hello! I'm trying to install MetAMOS on my system, but having a bit of trouble. I've run the following commands, which completed without incident: `python INSTALL.py core` `python INSTALL.py optional`...

jwestrob