meryl
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feature request: filter reads with kmers from bam file?
Would it be possible to add a feature to run meryl-lookup exclude/include on a BAM instead of a fasta and output BAM? This would be very useful for filtering reads from PacBio or ONT data in their original BAM format without going through FASTA intermediary. Or at least just output a list of reads from the fasta instead of generating the filtered fasta?
Thanks, KF