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marbl
Hello, When running parsnp v1.2 with the following command: `parsnp -r 1339277.3.fna -d genomes -p 1 -o out` I get the following strange error: ``` -->Reading Genbank file(s) for reference...
Dear HarvestTools team, It seems the example gbk file did not work. For practical applications, e.g., 100 bacterial genomes, the loading of gbk file is extremely slow (> 1h) and...
Hi, Harvesttools returns a "no filter name for a bed file" error when I run the BED file filter command below: $>harvesttools -i parsnp.ggr -b parsnp.bed -S out.snps -o parsnp.*filt*.ggr...
I always use the " -r ! " switch to choose the reference sequence. In version 1.2 that works great, but version 1.5.6 duplicates the chosen reference in the tree,...
I followed the given pipeline to create vcf file from parsnp to further use it for genotyphi.. Commands runs ok but not creating vcf file. any help ?
I followed the given pipeline to create vcf file from parsnp to further use it for genotyphi.. Commands runs ok but not creating vcf file. any help ?
hi,I am using parsnp to do genome alignment with different bacterial species, The following command failed: -->Reading Genome (asm, fasta) files from /media/xwg/HJ/rename/fna/import/.. |->[OK] -->Reading Genbank file(s) for reference (.gbk)...
I am trying to run parsnp for 330 bacteria genome (genome size ~2mb). The alignment seems to work properly. but it failed in the last step, the error message is...
Hello! I would like to use your suite in an IBM Power 9 little endian cluster. Would it be possible to get a binary for ppc64le or the source code...
I have dozens of bacterial genome with high assembled quality, and each genome has 2 chromosome and two or more plasmids. since parSNP only align core genes and call SNPs...
