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Does SALSA use supplemental Hi-C alignments?

Open Adamtaranto opened this issue 5 years ago • 0 comments

Will the scaffolding process be negatively affected if non-primary alignments (0x100) and supplementary alignments (0x800) are scrubbed from the Hi-C alignments?

Adamtaranto avatar Dec 11 '20 03:12 Adamtaranto