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Error in job reference_selection

Open AKBode opened this issue 3 years ago • 2 comments

Hi,

I'm using MetaCompass v2.0-beta. Example1 worked but example2 didn't. It ended up with

Error in job reference_selection while creating output files example2_output/reference_selection/mc.refseq.fna, example2_output/reference_selection/mc.refseq.ids. MissingOutputException in line 64 of /home/mpg02/MMTM/yiming.shi/metacompass/snakemake/metacompass.py: Missing files after 5 seconds: example2_output/reference_selection/mc.refseq.ids This might be due to filesystem latency. If that is the case, consider to increase the wait time with --latency-wait. Exiting because a job execution failed. Look above for error message [Thu Sep 30 18:14:47 2021] Will exit after finishing currently running jobs. [Thu Sep 30 18:14:47 2021] Exiting because a job execution failed. Look above for error message

Any idea how to fix the problem? Thanks in advance.

AKBode avatar Sep 30 '21 16:09 AKBode

Got the same error here.

Does someone know how to fix this?

Thank you!

gazollavolpiano avatar Feb 17 '22 00:02 gazollavolpiano

@AKBode try to check your mash version! I have updated mash to v.2.1 and it worked! :)

gazollavolpiano avatar Feb 18 '22 00:02 gazollavolpiano