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No such file or directory at /usr/local/bin/ktImportText line 71.

Open luckygoh opened this issue 6 years ago • 0 comments

Hi, I'm using Cygwin64 terminal on windows 10.

I have sucessfully installed krona with by using the scripts below.

$curl -LOk https://github.com/marbl/Krona/releases/download/v2.7/KronaTools-2.7.tar
$tar xvf KronaTools-2.7.tar
$cd KronaTools-2.7
$ ./install.pl
Creating links...
Installation complete.
Run ./updateTaxonomy.sh to use scripts that rely on NCBI taxonomy:
   ktClassifyBLAST
   ktGetLCA
   ktGetTaxInfo
   ktImportBLAST
   ktImportTaxonomy
   ktImportMETAREP-BLAST
Run ./updateAccessions.sh to use scripts that get taxonomy IDs from accessions:
   ktClassifyBLAST
   ktGetTaxIDFromAcc
   ktImportBLAST`
```

However, when i try to convert my text file to krona it said no such filw or directory.
 
```
`user@here ~/KronaTools-2.7
$ ktImportText C:/Users/Desktop/kronaformatfile -o t C:/Users/Desktop/output
No such file or directory at /usr/local/bin/ktImportText line 71.`
```

May i know is there a way around this ? Thank you.

Regards,
Goh.

luckygoh avatar Jun 24 '18 13:06 luckygoh