Is it possible to visualize a Qiime 1.9 OTU biom file

[wjacobus]

I've used qiime to generate an OTU table for my datasets. Is it possible to viz with Krona

[ondovb]

BIOM format is not officially supported, but it seems like you could use ktImportText after converting to TSV (I have not tried this): http://biom-format.org/documentation/biom_conversion.html

[ondovb]

It would be good to support BIOM officially.

[darnassiano]

Nope, I've converted it to tsv with biom, but had no results after :(

biom convert -i taxa_summary/filtered_otu_cc_greengenes_L7.biom --table-type="OTU table" --to-tsv -o L7.txt

[darnassiano]

Although, biom converted table can be visualized after adapting the data in the Excel Template.

[GenomicaMicrob]

Hi, I have created a little script to get all krona charts from an OTU table, check it here https://github.com/GenomicaMicrob/OTUsamples2krona Browse to the end of the README file, there is solution that might help.