Failure building taxonomy and accession table

[Visser-M]

Hello,

When running both ./updateTaxonomy.sh and ./updateAccessions.sh I encounter the following error:

molbio@CLCServer:/MolbioDataDrive/Scripts/KronaTools-2.7.1$ ./updateTaxonomy.sh Fetching taxdump.tar.gz... Fetching checksum... Checksum for taxdump.tar.gz matches server. ./updateTaxonomy.sh: line 287: make: command not found

Update failed. Building taxonomy table failed (see errors above). Issues can be tracked and reported at https://github.com/marbl/Krona/issues.

molbio@CLCServer:/MolbioDataDrive/Scripts/KronaTools-2.7.1$ ./updateAccessions.sh Fetching accession2taxid/dead_nucl.accession2taxid.gz... Fetching checksum... Checksum for accession2taxid/dead_nucl.accession2taxid.gz matches server. Fetching accession2taxid/dead_prot.accession2taxid.gz... Fetching checksum... Checksum for accession2taxid/dead_prot.accession2taxid.gz matches server. Fetching accession2taxid/dead_wgs.accession2taxid.gz... Fetching checksum... Checksum for accession2taxid/dead_wgs.accession2taxid.gz matches server. Fetching accession2taxid/nucl_gb.accession2taxid.gz... Fetching checksum... Checksum for accession2taxid/nucl_gb.accession2taxid.gz matches server. Fetching accession2taxid/nucl_wgs.accession2taxid.gz... Fetching checksum... Checksum for accession2taxid/nucl_wgs.accession2taxid.gz matches server. Fetching accession2taxid/prot.accession2taxid.gz... Fetching checksum... Checksum for accession2taxid/prot.accession2taxid.gz matches server. /MolbioDataDrive/Scripts/KronaTools-2.7.1/updateTaxonomy.sh: line 278: make: command not found

Update failed. Building accession2taxid failed (see errors above). Issues can be tracked and reported at https://github.com/marbl/Krona/issues.

Any guidance on resolving this issue?

[vfonti]

Same problem here. Have you found a way to fix this?

[vfonti]

Update: solved installing the make command. I run sudo apt-get install build essential and it worked for me. I am new in using Ubuntu and I still get lost in a glass of water every now and then. Cheers

[iuliachiciudean]

Hi, Same problem here. @Visser-M did you found any solution? @vfonti I tried running the command you suggested and got: E: Unable to locate package build E: Unable to locate package essential

Any suggestions? Thank you. Iulia

[cemselb]

Hello, any suggestions to fix this on Mac M2?