Krona
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avoid conflicts with other taxonomy-based tools and keep script names consistent (also create taxonomy-directory during installation if not already existing)
updateTaxonomy.sh
and updateAccessions.sh
would be most useful in the PATH. However their more generic name can be a problem if other taxonomy-based tools are installed and use the same naming scheme.
To fix that, the KRONA naming scheme of the perl-scripts (with "kt" prefixes) is applied to these scripts via softlinking during installation:
updateTaxonomy.sh
--> ktupdateTaxonomy
updateAccessions.sh
--> ktupdateAccessions
Both scripts are softlinked to the [prefix]/bin folder.
All instances mentioning the use of updateTaxonomy.sh
or updateAccessions.sh
in KronaTools.pm
and install.pl
have been corrected accordingly.