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ktImportTaxonomy does not work. Ran all the update files.

Open rafasfontenele opened this issue 5 years ago • 0 comments

I am using Krona tools 2-7. I ran both updateAcession.pl and updateTaxonomy.pl from Kronatools package as required after installation and everything finished without any issues. The output file contains a TaxID of 1. I have an example of one blast result but I did several tentatives with different blastx results and I have the same error. I have uninstalled and re-installed in case it was some error during installation. The error given to me is below. Any idea on what might be happening?


Loading taxonomy... Classifying Test505.tax_guide.blastx.out... [ WARNING ] "Test505.tax_guide.blastx.out" had e-values of 0. Approximated log[10] of 0 as -450. [ WARNING ] The following accessions were not found in the local database (if they were recently added to NCBI, use updateAccessions.sh to update the local database): YP_009001742 Writing Test505.tax_guide.blastx.tab...

To import, run: ktImportTaxonomy Test505.tax_guide.blastx.tab

thank you

rafasfontenele avatar Sep 25 '18 18:09 rafasfontenele