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[New metadata element]: `curation_rule`

Open matentzn opened this issue 2 years ago • 4 comments

Element id (e.g. creator_id, mapping_tool_version): (Must be lower case and contain only letters and underscores.)

curation_rule

Value data type (e.g. URI, URL, text, xsd:boolean):

EntityReference (URI/CURIE)

Description

See #150 for wider context.

A curation rule is a (potentially) complex condition executed by a human curator that led to the establishment of a mapping. Curation rules often involve complex domain-specific considerations, which are hard to capture in an automated fashion.

Constraints

  • Should only be recorded in conjunction with mapping_justification: HumanCurated.
  • Should be recorded with a term from a controlled vocabulary

Examples

https://github.com/mapping-commons/disease-mappings/issues/16

matentzn avatar Apr 18 '22 11:04 matentzn

Has this element been implemented? Will it be available in 1.0?

saubin78 avatar Jun 15 '22 13:06 saubin78

Unfortunately this was not planned for 1.0, but 1.1. Can you outline why you would need it more quickly? What use case are you thinking of using it for?

matentzn avatar Jun 16 '22 09:06 matentzn

Hi! No hurry. We'll discuss this point next week around D2KAB project's use cases and come back to you with further elements. We'll see in particular if values from a controlled vocabulary would fit, not quite sure...

saubin78 avatar Jun 17 '22 15:06 saubin78

We have been curating some examples for these, but I don't think the vocabulary should be standardised - there is a wide space of curation rules, and many can get very specific for any given ontology. Here we are discussing some very concrete examples: https://github.com/mapping-commons/disease-mappings/issues/16

matentzn avatar Jun 17 '22 15:06 matentzn