rootstock

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Issues citing PDB DOIs

1

I learned today that PDB entries have a DOI. However, when I try to cite them using manubot some come back with 502 errors. ` $manubot cite --render --format markdown...

duerrsimon

Table plugin for sorting, searching, downloading, etc.

10

I think it would also be super spiffy to have an ability to directly export tables as CSV (kind of a wishlist feature, probably). But I hunt through SI _so...

dhimmel

Tooltip plugin footnote support

2

@cthoyt asked [on twitter](https://twitter.com/cthoyt/status/1277970298768261120) about footnote support. Pandoc has a [markdown syntax](https://pandoc.org/MANUAL.html#footnotes) for including footnotes. @cthoyt added some footnotes to his manuscript in https://github.com/chemical-roles/manuscript/commit/9343961e326610c0f4173c4f7a63b84eb1a78305, which can be seen in [this...

dhimmel

data-generated tables

4

Forgive me if this is a naive question (I'm new to pandoc and manubot) - but I was wondering if there is a way that tables can be generated from...

brian-bot

Linking to the published version of a manuscript

4

One great feature of bioRxiv is that it automatically adds a link to the published version of a manuscript after publication. Could we add something similar to Manubot manuscripts? We...

agitter

Numbers in numbered lists could be bold

4

I wandered if the numbers in a numbered list maybe should be bold. If we look at https://manubot.github.io/rootstock/#basic-formatting it feels to me that the bullets have more "weight" than the...

Nebucatnetzer

Add manuscript to existing code repo

6

At the moment, it seems like the setup workflow is only suitable for starting a manuscript in a brand new repository, where the only thing in the repository is the...

kescobo

Spellcheck improvements

2

#333 introduced the first version of a spellchecker, but there are several remaining areas for improvement. **GitHub Actions:** ✔️ We should be able to run the spellcheck filter in GitHub...

agitter

first time user: observations and feature requests

1

Hi, Great work on manubot! Today, I finally had some time to play around with it. For our recent papers, I had written my own pandoc and pandoc-scholar-based workflow for...

fkloosterman

Comment on pull requests with GitHub Actions

16

Currently GitHub actions stores artifacts with rendered manuscript for pull request builds. However, Actions do not leave comments on pull requests. AppVeyor does leave comments, but requires using an additional...

dhimmel