imrep
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Published
20 hours ago •
mandricigor
mandricigor
Can not use dockers: can't open file 'setup.py': [Errno 2] No such file or directory.
Dear Igor Mandric and Serghei Mangul,
Thanks for your ImReP. I have a install issue, which is python: can't open file 'setup.py': [Errno 2] No such file or directory. And I can not install suffixtree, it is possible for your team to upload a new version app to docker?[ docker://maxsalm/imrep:170320]
(base) [zhou@localhost imrep]$ singularity exec \
> --bind ${dir}/imrep/ \
> --bind /home/zhou/raid/singularity/ \
> /home/zhou/raid/singularity/imrep.170320.sif \
> python /imrep/imrep.py \
> --bam /home/zhou/t12a/EGAD00001006282/RNA/CircRNA/STAR/Pt8_WEEK4_Aligned.sortedByCoord.out.bam \
> /home/zhou/t12a/EGAD00001006282/RNA/imrep/Pt8_WEEK4.cdr3
Traceback (most recent call last):
File "/imrep/imrep.py", line 23, in <module>
from search import IgorSuffixTree
File "/imrep/search.py", line 3, in <module>
from suffix_tree import SuffixTree
ImportError: No module named suffix_tree
(base) [zhou@localhost imrep]$ singularity exec \
> --bind ${dir}/imrep/ \
> --bind /home/zhou/raid/singularity/ \
> /home/zhou/raid/singularity/imrep.170320.sif \
> /bin/sh -c cd /imrep && ./install.sh
bash: ./install.sh: No such file or directory
(base) [zhou@localhost imrep]$ singularity exec \
> --bind ${dir}/imrep/ \
> --bind /home/zhou/raid/singularity/ \
> /home/zhou/raid/singularity/imrep.170320.sif \
> /bin/sh /imrep/install.sh
WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.
Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue.
To avoid this problem you can invoke Python with '-m pip' instead of running pip directly.
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
Looking in indexes: https://mirrors.bfsu.edu.cn/pypi/web/simple
Requirement already satisfied: pysam in /usr/lib/python2.7/dist-packages (0.10.0)
WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.
Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue.
To avoid this problem you can invoke Python with '-m pip' instead of running pip directly.
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
Looking in indexes: https://mirrors.bfsu.edu.cn/pypi/web/simple
Requirement already satisfied: biopython in /usr/lib/python2.7/dist-packages (1.68)
WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.
Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue.
To avoid this problem you can invoke Python with '-m pip' instead of running pip directly.
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
Looking in indexes: https://mirrors.bfsu.edu.cn/pypi/web/simple
Requirement already satisfied: intervaltree in /usr/local/lib/python2.7/dist-packages (3.0.2)
Requirement already satisfied: sortedcontainers<3.0,>=2.0 in /usr/local/lib/python2.7/dist-packages (from intervaltree) (2.1.0)
WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.
Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue.
To avoid this problem you can invoke Python with '-m pip' instead of running pip directly.
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
Looking in indexes: https://mirrors.bfsu.edu.cn/pypi/web/simple
Requirement already satisfied: jellyfish in /usr/local/lib/python2.7/dist-packages (0.6.1)
WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.
Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue.
To avoid this problem you can invoke Python with '-m pip' instead of running pip directly.
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
Looking in indexes: https://mirrors.bfsu.edu.cn/pypi/web/simple
Requirement already satisfied: numpy in /usr/lib/python2.7/dist-packages (1.12.1)
WARNING: pip is being invoked by an old script wrapper. This will fail in a future version of pip.
Please see https://github.com/pypa/pip/issues/5599 for advice on fixing the underlying issue.
To avoid this problem you can invoke Python with '-m pip' instead of running pip directly.
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
Looking in indexes: https://mirrors.bfsu.edu.cn/pypi/web/simple
Requirement already satisfied: networkx in /usr/local/lib/python2.7/dist-packages (2.2)
Requirement already satisfied: decorator>=4.3.0 in /usr/local/lib/python2.7/dist-packages (from networkx) (4.4.2)
tar: suffix_tree-2.1.tar.gz: Cannot open: No such file or directory
tar: Error is not recoverable: exiting now
/imrep/install.sh: 8: cd: can't cd to suffix_tree-2.1
python: can't open file 'setup.py': [Errno 2] No such file or directory
Usage:
pip <command> [options]
Commands:
install Install packages.
download Download packages.
uninstall Uninstall packages.
freeze Output installed packages in requirements format.
list List installed packages.
show Show information about installed packages.
check Verify installed packages have compatible dependencies.
config Manage local and global configuration.
search Search PyPI for packages.
cache Inspect and manage pip's wheel cache.
wheel Build wheels from your requirements.
hash Compute hashes of package archives.
completion A helper command used for command completion.
debug Show information useful for debugging.
help Show help for commands.
General Options:
-h, --help Show help.
--isolated Run pip in an isolated mode, ignoring environment variables and user configuration.
-v, --verbose Give more output. Option is additive, and can be used up to 3 times.
-V, --version Show version and exit.
-q, --quiet Give less output. Option is additive, and can be used up to 3 times (corresponding to WARNING, ERROR, and
CRITICAL logging levels).
--log <path> Path to a verbose appending log.
--no-input Disable prompting for input.
--proxy <proxy> Specify a proxy in the form [user:passwd@]proxy.server:port.
--retries <retries> Maximum number of retries each connection should attempt (default 5 times).
--timeout <sec> Set the socket timeout (default 15 seconds).
--exists-action <action> Default action when a path already exists: (s)witch, (i)gnore, (w)ipe, (b)ackup, (a)bort.
--trusted-host <hostname> Mark this host or host:port pair as trusted, even though it does not have valid or any HTTPS.
--cert <path> Path to alternate CA bundle.
--client-cert <path> Path to SSL client certificate, a single file containing the private key and the certificate in PEM format.
--cache-dir <dir> Store the cache data in <dir>.
--no-cache-dir Disable the cache.
--disable-pip-version-check
Don't periodically check PyPI to determine whether a new version of pip is available for download. Implied
with --no-index.
--no-color Suppress colored output
--no-python-version-warning
Silence deprecation warnings for upcoming unsupported Pythons.
--use-feature <feature> Enable new functionality, that may be backward incompatible.
--use-deprecated <feature> Enable deprecated functionality, that will be removed in the future.
(base) [zhou@localhost imrep]$ ls
(base) [zhou@localhost imrep]$ wget https://hackage.haskell.org/package/suffixtree-0.2.2.1/suffixtree-0.2.2.1.tar.gz
--2022-04-25 03:08:54-- https://hackage.haskell.org/package/suffixtree-0.2.2.1/suffixtree-0.2.2.1.tar.gz
Resolving [hackage.haskell.org](http://hackage.haskell.org/) ([hackage.haskell.org](http://hackage.haskell.org/))... 151.101.108.68
Connecting to [hackage.haskell.org](http://hackage.haskell.org/) ([hackage.haskell.org](http://hackage.haskell.org/))|151.101.108.68|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: unspecified [application/x-gzip]
Saving to: ‘suffixtree-0.2.2.1.tar.gz’
[<=> ] 0 [ <=> ] 6,842 --.-K/s in 0s
2022-04-25 03:08:57 (38.6 MB/s) - ‘suffixtree-0.2.2.1.tar.gz’ saved [6842]
(base) [zhou@localhost imrep]$ ls
suffixtree-0.2.2.1.tar.gz
(base) [zhou@localhost imrep]$ wget https://hackage.haskell.org/package/suffixtree-0.2.1/suffixtree-0.2.1.tar.gz
--2022-04-25 03:09:50-- https://hackage.haskell.org/package/suffixtree-0.2.1/suffixtree-0.2.1.tar.gz
Resolving [hackage.haskell.org](http://hackage.haskell.org/) ([hackage.haskell.org](http://hackage.haskell.org/))... 151.101.108.68
Connecting to [hackage.haskell.org](http://hackage.haskell.org/) ([hackage.haskell.org](http://hackage.haskell.org/))|151.101.108.68|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: unspecified [application/x-gzip]
Saving to: ‘suffixtree-0.2.1.tar.gz’
[<=> ] 0 [ <=> ] 6,919 --.-K/s in 0s
2022-04-25 03:09:51 (32.4 MB/s) - ‘suffixtree-0.2.1.tar.gz’ saved [6919]
(base) [zhou@localhost imrep]$ ls
suffixtree-0.2.1.tar.gz suffixtree-0.2.2.1.tar.gz
(base) [zhou@localhost imrep]$ rm suffixtree-0.2.2.1.tar.gz
(base) [zhou@localhost imrep]$ ls
suffixtree-0.2.1.tar.gz
(base) [zhou@localhost imrep]$ tar -xvf suffixtree-0.2.1.tar.gz
suffixtree-0.2.1/
suffixtree-0.2.1/Data/
suffixtree-0.2.1/Data/SuffixTree.hs
suffixtree-0.2.1/suffixtree.cabal
suffixtree-0.2.1/examples/
suffixtree-0.2.1/examples/UniqueMatch.hs
suffixtree-0.2.1/examples/Tiny.hs
suffixtree-0.2.1/examples/Makefile
suffixtree-0.2.1/Makefile
suffixtree-0.2.1/LICENSE
suffixtree-0.2.1/Setup.lhs
(base) [zhou@localhost imrep]$ ls
suffixtree-0.2.1 suffixtree-0.2.1.tar.gz
(base) [zhou@localhost imrep]$ cd suffixtree-0.2.1
(base) [zhou@localhost suffixtree-0.2.1]$ ls
Data examples LICENSE Makefile Setup.lhs suffixtree.cabal
(base) [zhou@localhost suffixtree-0.2.1]$ pip install suffixtree==0.2.1
Looking in indexes: https://mirrors.bfsu.edu.cn/pypi/web/simple
ERROR: Could not find a version that satisfies the requirement suffixtree==0.2.1 (from versions: 0.1, 0.1.1, 0.2.0)
ERROR: No matching distribution found for suffixtree==0.2.1
(base) [zhou@localhost suffixtree-0.2.1]$ pip install suffixtree=0.2.1
ERROR: Invalid requirement: 'suffixtree=0.2.1'
Hint: = is not a valid operator. Did you mean == ?
(base) [zhou@localhost suffixtree-0.2.1]$ pip2 install suffixtree==0.2.1
/usr/lib/python2.7/site-packages/secretstorage/dhcrypto.py:15: CryptographyDeprecationWarning: Python 2 is no longer supported by the Python core team. Support for it is now deprecated in cryptography, and will be removed in the next release.
from cryptography.utils import int_from_bytes
DEPRECATION: Python 2.7 reached the end of its life on January 1st, 2020. Please upgrade your Python as Python 2.7 is no longer maintained. pip 21.0 will drop support for Python 2.7 in January 2021. More details about Python 2 support in pip can be found at https://pip.pypa.io/en/latest/development/release-process/#python-2-support pip 21.0 will remove support for this functionality.
Defaulting to user installation because normal site-packages is not writeable
Looking in indexes: https://mirrors.bfsu.edu.cn/pypi/web/simple
WARNING: Retrying (Retry(total=4, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLError(1, u'[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:618)'),)': /pypi/web/simple/suffixtree/
WARNING: Retrying (Retry(total=3, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLError(1, u'[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:618)'),)': /pypi/web/simple/suffixtree/
WARNING: Retrying (Retry(total=2, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLError(1, u'[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:618)'),)': /pypi/web/simple/suffixtree/
WARNING: Retrying (Retry(total=1, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLError(1, u'[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:618)'),)': /pypi/web/simple/suffixtree/
WARNING: Retrying (Retry(total=0, connect=None, read=None, redirect=None, status=None)) after connection broken by 'SSLError(SSLError(1, u'[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:618)'),)': /pypi/web/simple/suffixtree/
Could not fetch URL https://mirrors.bfsu.edu.cn/pypi/web/simple/suffixtree/: There was a problem confirming the ssl certificate: HTTPSConnectionPool(host='[mirrors.bfsu.edu.cn](http://mirrors.bfsu.edu.cn/)', port=443): Max retries exceeded with url: /pypi/web/simple/suffixtree/ (Caused by SSLError(SSLError(1, u'[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed (_ssl.c:618)'),)) - skipping
ERROR: Could not find a version that satisfies the requirement suffixtree==0.2.1 (from versions: none)
ERROR: No matching distribution found for suffixtree==0.2.1
(base) [zhou@localhost suffixtree-0.2.1]$ pip3 install suffixtree==0.2.1
Looking in indexes: https://mirrors.bfsu.edu.cn/pypi/web/simple
ERROR: Could not find a version that satisfies the requirement suffixtree==0.2.1 (from versions: 0.1, 0.1.1, 0.2.0)
ERROR: No matching distribution found for suffixtree==0.2.1
(base) [zhou@localhost suffixtree-0.2.1]$ conda
usage: conda [-h] [-V] command ...
conda is a tool for managing and deploying applications, environments and packages.
Options:
positional arguments:
command
clean Remove unused packages and caches.
compare Compare packages between conda environments.
config Modify configuration values in .condarc. This is modeled
after the git config command. Writes to the user .condarc
file (/home/zhou/.condarc) by default.
create Create a new conda environment from a list of specified
packages.
help Displays a list of available conda commands and their help
strings.
info Display information about current conda install.
init Initialize conda for shell interaction. [Experimental]
install Installs a list of packages into a specified conda
environment.
list List linked packages in a conda environment.
package Low-level conda package utility. (EXPERIMENTAL)
remove Remove a list of packages from a specified conda environment.
uninstall Alias for conda remove.
run Run an executable in a conda environment. [Experimental]
search Search for packages and display associated information. The
input is a MatchSpec, a query language for conda packages.
See examples below.
update Updates conda packages to the latest compatible version.
upgrade Alias for conda update.
optional arguments:
-h, --help Show this help message and exit.
-V, --version Show the conda version number and exit.
conda commands available from other packages:
env
(base) [zhou@localhost suffixtree-0.2.1]$ conda create --name imrep
Collecting package metadata (current_repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.4
latest version: 4.12.0
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /home/zhou/miniconda2/envs/imrep
Proceed ([y]/n)? y
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
#
# To activate this environment, use
#
# $ conda activate imrep
#
# To deactivate an active environment, use
#
# $ conda deactivate
(base) [zhou@localhost suffixtree-0.2.1]$ conda activate imrep
(imrep) [zhou@localhost suffixtree-0.2.1]$ ls
Data examples LICENSE Makefile Setup.lhs suffixtree.cabal
(imrep) [zhou@localhost suffixtree-0.2.1]$ python setup.py install
python: can't open file 'setup.py': [Errno 2] No such file or directory
(imrep) [zhou@localhost suffixtree-0.2.1]$ make
ghc -O --make Setup
make: ghc: Command not found
make: *** [Setup] Error 127
(imrep) [zhou@localhost suffixtree-0.2.1]$ makefile
bash: makefile: command not found...
(imrep) [zhou@localhost suffixtree-0.2.1]$ ./Setup.lhs install
/usr/bin/env: runhaskell: No such file or directory
(imrep) [zhou@localhost suffixtree-0.2.1]$ conda install -c conda-forge ghc
Collecting package metadata (current_repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 4.8.4
latest version: 4.12.0
Please update conda by running
$ conda update -n base -c defaults conda
## Package Plan ##
environment location: /home/zhou/miniconda2/envs/imrep
added / updated specs:
- ghc
The following packages will be downloaded:
package | build
---------------------------|-----------------
binutils_linux-64-2.36 | hf3e587d_9 24 KB conda-forge
gcc_impl_linux-64-11.2.0 | h82a94d6_16 49.7 MB conda-forge
gcc_linux-64-11.2.0 | h39a9532_9 25 KB conda-forge
ghc-8.10.7 | h4a049f1_0 173.3 MB conda-forge
libgcc-devel_linux-64-11.2.0| h0952999_16 3.3 MB conda-forge
libsanitizer-11.2.0 | he4da1e4_16 5.9 MB conda-forge
------------------------------------------------------------
Total: 232.2 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge
_openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu
binutils_impl_lin~ conda-forge/linux-64::binutils_impl_linux-64-2.36.1-h193b22a_2
binutils_linux-64 conda-forge/linux-64::binutils_linux-64-2.36-hf3e587d_9
gcc_impl_linux-64 conda-forge/linux-64::gcc_impl_linux-64-11.2.0-h82a94d6_16
gcc_linux-64 conda-forge/linux-64::gcc_linux-64-11.2.0-h39a9532_9
ghc conda-forge/linux-64::ghc-8.10.7-h4a049f1_0
gmp conda-forge/linux-64::gmp-6.2.1-h58526e2_0
kernel-headers_li~ conda-forge/noarch::kernel-headers_linux-64-2.6.32-he073ed8_15
ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.36.1-hea4e1c9_2
libffi conda-forge/linux-64::libffi-3.3-h58526e2_2
libgcc-devel_linu~ conda-forge/linux-64::libgcc-devel_linux-64-11.2.0-h0952999_16
libgcc-ng conda-forge/linux-64::libgcc-ng-11.2.0-h1d223b6_16
libgomp conda-forge/linux-64::libgomp-11.2.0-h1d223b6_16
libsanitizer conda-forge/linux-64::libsanitizer-11.2.0-he4da1e4_16
libstdcxx-ng conda-forge/linux-64::libstdcxx-ng-11.2.0-he4da1e4_16
ncurses conda-forge/linux-64::ncurses-6.3-h27087fc_1
sysroot_linux-64 conda-forge/noarch::sysroot_linux-64-2.12-he073ed8_15
xz conda-forge/linux-64::xz-5.2.5-h516909a_1
Proceed ([y]/n)? y
Downloading and Extracting Packages
ghc-8.10.7 | 173.3 MB | ghc-8.10.7 | 173.3 MB | ghc-8.10.7 | 173.3 MB | 1 ghc-8.10.7 | 173.3 MB | #6 ghc-8.10.7 | 173.3 MB | ##5 ghc-8.10.7 | 173.3 MB | ##8 ghc-8.10.7 | 173.3 MB | ####7 ghc-8.10.7 | 173.3 MB | #####3 ghc-8.10.7 | 173.3 MB | #####5 ghc-8.10.7 | 173.3 MB | ######9 ghc-8.10.7 | 173.3 MB | ########4 ghc-8.10.7 | 173.3 MB | ##########2 ghc-8.10.7 | 173.3 MB | ###########3 ghc-8.10.7 | 173.3 MB | ############6 ghc-8.10.7 | 173.3 MB | ##############8 ghc-8.10.7 | 173.3 MB | #################3 ghc-8.10.7 | 173.3 MB | ##################9 ghc-8.10.7 | 173.3 MB | ####################8 ghc-8.10.7 | 173.3 MB | #####################8 ghc-8.10.7 | 173.3 MB | ########################3 ghc-8.10.7 | 173.3 MB | ######################### ghc-8.10.7 | 173.3 MB | ###########################2 ghc-8.10.7 | 173.3 MB | ############################3 ghc-8.10.7 | 173.3 MB | #############################1 ghc-8.10.7 | 173.3 MB | #############################9 ghc-8.10.7 | 173.3 MB | ##############################6 ghc-8.10.7 | 173.3 MB | ###############################3 ghc-8.10.7 | 173.3 MB | ###############################9 ghc-8.10.7 | 173.3 MB | ################################5 ghc-8.10.7 | 173.3 MB | #################################1 ghc-8.10.7 | 173.3 MB | #################################7 ghc-8.10.7 | 173.3 MB | ##################################2 ghc-8.10.7 | 173.3 MB | ##################################8 ghc-8.10.7 | 173.3 MB | ###################################4 ghc-8.10.7 | 173.3 MB | #################################### ghc-8.10.7 | 173.3 MB | ####################################5 ghc-8.10.7 | 173.3 MB | #####################################7 ghc-8.10.7 | 173.3 MB | #######################################6 ghc-8.10.7 | 173.3 MB | ##########################################5 ghc-8.10.7 | 173.3 MB | ############################################# ghc-8.10.7 | 173.3 MB | ##############################################3 ghc-8.10.7 | 173.3 MB | ###############################################5 ghc-8.10.7 | 173.3 MB | ################################################6 ghc-8.10.7 | 173.3 MB | #################################################6 ghc-8.10.7 | 173.3 MB | ##################################################4 ghc-8.10.7 | 173.3 MB | ###################################################7 ghc-8.10.7 | 173.3 MB | ######################################################8 ghc-8.10.7 | 173.3 MB | ########################################################1 ghc-8.10.7 | 173.3 MB | ########################################################7 ghc-8.10.7 | 173.3 MB | ########################################################## ghc-8.10.7 | 173.3 MB | ############################################################6 ghc-8.10.7 | 173.3 MB | #############################################################3 ghc-8.10.7 | 173.3 MB | ###############################################################2 ghc-8.10.7 | 173.3 MB | ################################################################5 ghc-8.10.7 | 173.3 MB | #################################################################2 ghc-8.10.7 | 173.3 MB | ###################################################################4 ghc-8.10.7 | 173.3 MB | ####################################################################1 ghc-8.10.7 | 173.3 MB | ######################################################################4 ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | #########################################################################ghc-8.10.7 | 173.3 MB | ################################################################################################ | 100%
binutils_linux-64-2. | 24 KB | binutils_linux-64-2. | 24 KB | ################################################################################################ | 100%
gcc_impl_linux-64-11 | 49.7 MB | gcc_impl_linux-64-11 | 49.7 MB | gcc_impl_linux-64-11 | 49.7 MB | 3 gcc_impl_linux-64-11 | 49.7 MB | 6 gcc_impl_linux-64-11 | 49.7 MB | #####2 gcc_impl_linux-64-11 | 49.7 MB | ############8 gcc_impl_linux-64-11 | 49.7 MB | ############################5 gcc_impl_linux-64-11 | 49.7 MB | ##################################4 gcc_impl_linux-64-11 | 49.7 MB | ######################################8 gcc_impl_linux-64-11 | 49.7 MB | ###########################################3 gcc_impl_linux-64-11 | 49.7 MB | ##############################################8 gcc_impl_linux-64-11 | 49.7 MB | #####################################################6 gcc_impl_linux-64-11 | 49.7 MB | #########################################################8 gcc_impl_linux-64-11 | 49.7 MB | ##############################################################4 gcc_impl_linux-64-11 | 49.7 MB | ###################################################################5 gcc_impl_linux-64-11 | 49.7 MB | ######################################################################1 gcc_impl_linux-64-11 | 49.7 MB | #########################################################################gcc_impl_linux-64-11 | 49.7 MB | #########################################################################gcc_impl_linux-64-11 | 49.7 MB | #########################################################################gcc_impl_linux-64-11 | 49.7 MB | #########################################################################gcc_impl_linux-64-11 | 49.7 MB | #########################################################################gcc_impl_linux-64-11 | 49.7 MB | #########################################################################gcc_impl_linux-64-11 | 49.7 MB | ################################################################################################ | 100%
libgcc-devel_linux-6 | 3.3 MB | libgcc-devel_linux-6 | 3.3 MB | 4 libgcc-devel_linux-6 | 3.3 MB | ############################################6 libgcc-devel_linux-6 | 3.3 MB | #########################################################################libgcc-devel_linux-6 | 3.3 MB | ################################################################################################ | 100%
libsanitizer-11.2.0 | 5.9 MB | libsanitizer-11.2.0 | 5.9 MB | 2 libsanitizer-11.2.0 | 5.9 MB | #################################3 libsanitizer-11.2.0 | 5.9 MB | #########################################################################libsanitizer-11.2.0 | 5.9 MB | ################################################################################################ | 100%
gcc_linux-64-11.2.0 | 25 KB | gcc_linux-64-11.2.0 | 25 KB | ################################################################################################ | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
(imrep) [zhou@localhost suffixtree-0.2.1]$ ./Setup.lhs install
Run the 'configure' command first.
(imrep) [zhou@localhost suffixtree-0.2.1]$ ./Setup.lhs configure
Configuring suffixtree-0.2.1...
Setup.lhs: Encountered missing or private dependencies:
QuickCheck -any
(imrep) [zhou@localhost suffixtree-0.2.1]$ ./Setup.lhs install
Run the 'configure' command first.
Best, JG
