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Published 20 hours ago • verified publisher icon mandricigor

ImRep complaining about index file being older than the BAM file

Open vihaj opened this issue 4 years ago • 2 comments

When running ImRep with a BAM, I get the error saying that BAM file and index file are out of sync, even though the index file that is used is generated for the BAM file.

Attached is a screenshot of the issue for reference. Any help or any pointer on this is appreciated !

vihaj avatar Dec 17 '20 16:12 vihaj

When running ImRep with a BAM, I get the error saying that BAM file and index file are out of sync, even though the index file that is used is generated for the BAM file.

Attached is a screenshot of the issue for reference. Any help or any pointer on this is appreciated !

IMG_20201217_213557

vihaj avatar Dec 17 '20 16:12 vihaj

I solved this problem by adding an option "--chrFormat2" to the command.

DaeunKim115 avatar Jul 27 '21 04:07 DaeunKim115