options

[smangul1]

check if the extension is bam if bam was selected right now if i run

~/anaconda2/bin/python imrep.py --noCast example/toyExample.fastq test

this error

Traceback (most recent call last): File "imrep.py", line 1096, in imrep = ImReP(settings) File "imrep.py", line 394, in init self.__read_reads() File "imrep.py", line 497, in __read_reads while not file_content[0][0] == ">": IndexError: list index out of range