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Published
20 hours ago •
mamba-org
mamba-org
boa build not picking up .condarc settings
I'm unsure as to what the intended behaviour is here exactly but I would have assumed that - as conda-build does - boa build would respect settings in .condarc. That doesn't seem to entirely be the case and in particular not for ssl_verify. The upshot is that we see https://github.com/mamba-org/mamba/issues/697 again (which received a specific fix but we ended up working around by just configuring ssl_verify: false on Windows):
Finalizing run for my_package
+--------------------- Traceback (most recent call last) ---------------------+
| |
| C:\Miniconda\lib\site-packages\boa\core\run_build.py:515 in build_recipe |
| |
| 512 |
| 513 o.config._build_id = o0.config.build_id |
| 514 |
| > 515 o.finalize_solve(sorted_outputs) |
| 516 |
| 517 meta = MetaData(recipe_path, o) |
| 518 o.set_final_build_id(meta) |
| C:\Miniconda\lib\site-packages\boa\core\recipe_output.py:663 in |
| finalize_solve |
| |
| 660 |
| 661 self._solve_env("build", all_outputs) |
| 662 self._solve_env("host", all_outputs) |
| > 663 self._solve_env("run", all_outputs) |
| 664 |
| 665 # TODO figure out if we can avoid this?! |
| 666 if self.config.variant.get("python") is None: |
| |
| C:\Miniconda\lib\site-packages\boa\core\recipe_output.py:605 in _solve_env |
| |
| 602 subdir = self.config.build_subdir |
| 603 |
| 604 solver, pkg_cache = get_solver( |
| > 605 subdir, output_folder=self.config.output_folder |
| 606 ) |
| 607 if env == "host": |
| 608 MambaContext().target_prefix = self.config.host_prefi |
| |
| C:\Miniconda\lib\site-packages\boa\core\solver.py:49 in get_solver |
| |
| 46 os.makedirs(pkg_cache, exist_ok=True) |
| 47 |
| 48 if not solver_cache.get(subdir): |
| > 49 solver_cache[subdir] = MambaSolver([], subdir, output_folder) |
| 50 |
| 51 return solver_cache[subdir], pkg_cache |
| 52 |
| |
| C:\Miniconda\lib\site-packages\boa\core\solver.py:128 in __init__ |
| |
| 125 self.pool = libmambapy.Pool() |
| 126 self.repos = [] |
| 127 self.index = load_channels( |
| > 128 self.pool, self.channels, self.repos, platform=platform |
| 129 ) |
| 130 |
| 131 # if platform == context.subdir: |
| |
| C:\Miniconda\lib\site-packages\mamba\utils.py:128 in load_channels |
| |
| 125 platform=platform, |
| 126 use_local=use_local, |
| 127 repodata_fn=repodata_fn, |
| > 128 use_cache=use_cache, |
| 129 ) |
| 130 |
| 131 if has_priority is None: |
| |
| C:\Miniconda\lib\site-packages\mamba\utils.py:103 in get_index |
| |
| 100 ) |
| 101 dlist.add(sd) |
| 102 |
| > 103 is_downloaded = dlist.download(api.MAMBA_DOWNLOAD_FAILFAST) |
| 104 |
| 105 if not is_downloaded: |
| 106 raise RuntimeError("Error downloading repodata.") |
+-----------------------------------------------------------------------------+
RuntimeError: Download error (60) SSL peer certificate or SSH remote key was
not OK
[https://proxy-to-anaconda-main/noarch/repodata.json]
schannel: CertGetCertificateChain trust error
CERT_TRUST_REVOCATION_STATUS_UNKNOWN
If I set a CONDA_SSL_VERIFY=false environment variable then that is picked up and the build now succeeds.
I dug through the code a bit to try and figure out what was going on but I'm at a bit of a loss - I can see that init_api_context() is being called and it's certainly picking up some configuration, such as our custom channels.
This is with mamba-0.21.2 and boa-0.9.0.
I noticed the same issue with channel_alias:
$ mamba info
__ __ __ __
/ \ / \ / \ / \
/ \/ \/ \/ \
███████████████/ /██/ /██/ /██/ /████████████████████████
/ / \ / \ / \ / \ \____
/ / \_/ \_/ \_/ \ o \__,
/ _/ \_____/ `
|/
███╗ ███╗ █████╗ ███╗ ███╗██████╗ █████╗
████╗ ████║██╔══██╗████╗ ████║██╔══██╗██╔══██╗
██╔████╔██║███████║██╔████╔██║██████╔╝███████║
██║╚██╔╝██║██╔══██║██║╚██╔╝██║██╔══██╗██╔══██║
██║ ╚═╝ ██║██║ ██║██║ ╚═╝ ██║██████╔╝██║ ██║
╚═╝ ╚═╝╚═╝ ╚═╝╚═╝ ╚═╝╚═════╝ ╚═╝ ╚═╝
mamba (0.22.1) supported by @QuantStack
GitHub: https://github.com/mamba-org/mamba
Twitter: https://twitter.com/QuantStack
active environment : base
active env location : /opt/conda
shell level : 1
user config file : /root/.condarc
populated config files : /opt/conda/.condarc
conda version : 4.12.0
conda-build version : 3.21.8
python version : 3.9.10.final.0
virtual packages : __linux=5.10.76=0
__glibc=2.17=0
__unix=0=0
__archspec=1=x86_64
base environment : /opt/conda (writable)
conda av data dir : /opt/conda/etc/conda
conda av metadata url : None
channel URLs : https://conda.maxiv.lu.se/get/maxiv-kits/linux-64
https://conda.maxiv.lu.se/get/maxiv-kits/noarch
https://conda.maxiv.lu.se/get/conda-forge/linux-64
https://conda.maxiv.lu.se/get/conda-forge/noarch
package cache : /opt/conda/pkgs
/root/.conda/pkgs
envs directories : /opt/conda/envs
/root/.conda/envs
platform : linux-64
user-agent : conda/4.12.0 requests/2.27.1 CPython/3.9.10 Linux/5.10.76-linuxkit centos/7.9.2009 glibc/2.17
UID:GID : 0:0
netrc file : None
offline mode : False
$ cat /opt/conda/.condarc
channels:
- maxiv-kits
- conda-forge
channel_alias: https://conda.maxiv.lu.se/get
auto_update_conda: false
show_channel_urls: true
boa build recipe raises Error downloading repodata. and I noticed it's trying to download:
[(<libmambapy.bindings.SubdirData object at 0x7f21473d08b0>, {'platform': 'linux-64', 'url': 'https://conda.anaconda.org/maxiv-kits/linux-64', 'channel': maxiv-kits[linux-64,noarch]}), (<libmambapy.bindings.SubdirData object at 0x7f21473d0530>, {'platform': 'noarch', 'url': 'https://conda.anaconda.org/maxiv-kits/noarch', 'channel': maxiv-kits[linux-64,noarch]}), (<libmambapy.bindings.SubdirData object at 0x7f21473c9cf0>, {'platform': 'linux-64', 'url': 'https://conda.anaconda.org/conda-forge/linux-64', 'channel': conda-forge[linux-64,noarch]}), (<libmambapy.bindings.SubdirData object at 0x7f21473d2330>, {'platform': 'noarch', 'url': 'https://conda.anaconda.org/conda-forge/noarch', 'channel': conda-forge[linux-64,noarch]})]
It's not using the channel_alias.
Exporting CONDA_CHANNEL_ALIAS=https://conda.maxiv.lu.se/get works.
@wolfv I wonder if this also applies to conda channel ordering? When I run conda mambabuild, there is solve step and then it creates a test environment and performs the solve again (I think!) I am using r-arrow=3.0.0 as an example. Context: I copied the build script locally and am building with R=3.5 since conda-forge only has R36 builds of r-arrow. Link here -- https://github.com/apache/arrow/tree/apache-arrow-3.0.0/dev/tasks/conda-recipes/r-arrow.
I simply added a conda_build_config.yaml and added R-base=3.5, R-base=3.6/
When it creates the test environment, the channels that we pull from are different than the channels from the solve step! I have recently seen this fail our build with:
ERROR: This cross-compiler package contains no program $PREFIX/bin/x86_64-conda_cos6-linux-gnu-gfortran
And I wonder if it is due to the channel mixing per this comment -- https://github.com/conda/conda/issues/10303#issuecomment-714046853
FWIW, when I run this in conda build, it retrieves pkgs from the same channels and the builds succeeds! (I am actually still stuck on this, and I am trying to find a low-friction way around this if you know of one. We are using the boa lib in a python script, so substituting for conda is somewhat cumbersome, alas! I think the "cross compiler" error happens because it is pulling r-base from anacondar.)
Wondering how difficult it would be look into this?
Solve Step
## Package Plan ##
environment location: /home/coder/miniconda/conda-bld/r-arrow_1655925823577/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_plac
The following NEW packages will be INSTALLED:
_libgcc_mutex: 0.1-conda_forge artifactory/external-conda-forge
_openmp_mutex: 4.5-2_gnu artifactory/external-conda-forge
_r-mutex: 1.0.1-anacondar_1 artifactory/external-conda-forge
abseil-cpp: 20200225.2-he1b5a44_2 artifactory/external-conda-forge
arrow-cpp: 3.0.0-py39hced866c_0 artifactory/external-conda-anaconda
binutils_impl_linux-64: 2.36.1-h193b22a_2 artifactory/external-conda-forge
binutils_linux-64: 2.36-hf3e587d_33 artifactory/external-conda-forge
boost-cpp: 1.69.0-h11c811c_1000 artifactory/external-conda-forge
brotli: 1.0.9-h166bdaf_7 artifactory/external-conda-forge
brotli-bin: 1.0.9-h166bdaf_7 artifactory/external-conda-forge
bwidget: 1.9.14-ha770c72_1 artifactory/external-conda-forge
bzip2: 1.0.8-h7f98852_4 artifactory/external-conda-forge
c-ares: 1.18.1-h7f98852_0 artifactory/external-conda-forge
ca-certificates: 2022.6.15-ha878542_0 artifactory/external-conda-forge
cairo: 1.16.0-h18b612c_1001 artifactory/external-conda-forge
curl: 7.68.0-hf8cf82a_0 artifactory/external-conda-forge
double-conversion: 3.2.0-h9c3ff4c_0 artifactory/external-conda-forge
expat: 2.4.8-h27087fc_0 artifactory/external-conda-forge
fontconfig: 2.14.0-h8e229c2_0 artifactory/external-conda-forge
freetype: 2.10.4-h0708190_1 artifactory/external-conda-forge
gcc_impl_linux-64: 7.5.0-habd7529_20 artifactory/external-conda-forge
gcc_linux-64: 7.5.0-h47867f9_33 artifactory/external-conda-forge
gettext: 0.19.8.1-h73d1719_1008 artifactory/external-conda-forge
gflags: 2.2.2-he1b5a44_1004 artifactory/external-conda-forge
gfortran_impl_linux-64: 7.5.0-h56cb351_20 artifactory/external-conda-forge
gfortran_linux-64: 7.5.0-h78c8a43_33 artifactory/external-conda-forge
glib: 2.70.2-h780b84a_4 artifactory/external-conda-forge
glib-tools: 2.70.2-h780b84a_4 artifactory/external-conda-forge
glog: 0.6.0-h6f12383_0 artifactory/external-conda-forge
graphite2: 1.3.13-h58526e2_1001 artifactory/external-conda-forge
grpc-cpp: 1.29.0-h8e748ff_0 artifactory/external-conda-forge
gsl: 2.5-h294904e_1 artifactory/external-conda-forge
gxx_impl_linux-64: 7.5.0-hd0bb8aa_20 artifactory/external-conda-forge
gxx_linux-64: 7.5.0-h555fc39_33 artifactory/external-conda-forge
harfbuzz: 2.4.0-h37c48d4_1 artifactory/external-conda-forge
icu: 58.2-hf484d3e_1000 artifactory/external-conda-forge
jpeg: 9e-h166bdaf_1 artifactory/external-conda-forge
kernel-headers_linux-64: 2.6.32-he073ed8_15 artifactory/external-conda-forge
krb5: 1.16.4-h2fd8d38_0 artifactory/external-conda-forge
ld_impl_linux-64: 2.36.1-hea4e1c9_2 artifactory/external-conda-forge
libblas: 3.9.0-13_linux64_openblas artifactory/external-conda-forge
libboost: 1.73.0-h3ff78a5_11 artifactory/external-conda-anaconda
libbrotlicommon: 1.0.9-h166bdaf_7 artifactory/external-conda-forge
libbrotlidec: 1.0.9-h166bdaf_7 artifactory/external-conda-forge
libbrotlienc: 1.0.9-h166bdaf_7 artifactory/external-conda-forge
libcblas: 3.9.0-13_linux64_openblas artifactory/external-conda-forge
libcurl: 7.68.0-hda55be3_0 artifactory/external-conda-forge
libedit: 3.1.20191231-he28a2e2_2 artifactory/external-conda-forge
libevent: 2.1.10-h9b69904_4 artifactory/external-conda-forge
libffi: 3.4.2-h7f98852_5 artifactory/external-conda-forge
libgcc-devel_linux-64: 7.5.0-hda03d7c_20 artifactory/external-conda-forge
libgcc-ng: 12.1.0-h8d9b700_16 artifactory/external-conda-forge
libgfortran-ng: 7.5.0-h14aa051_20 artifactory/external-conda-forge
libgfortran4: 7.5.0-h14aa051_20 artifactory/external-conda-forge
libglib: 2.70.2-h174f98d_4 artifactory/external-conda-forge
libgomp: 12.1.0-h8d9b700_16 artifactory/external-conda-forge
libiconv: 1.16-h516909a_0 artifactory/external-conda-forge
liblapack: 3.9.0-13_linux64_openblas artifactory/external-conda-forge
libnsl: 2.0.0-h7f98852_0 artifactory/external-conda-forge
libopenblas: 0.3.18-hf726d26_0 artifactory/external-conda-anaconda
libpng: 1.6.37-h21135ba_2 artifactory/external-conda-forge
libprotobuf: 3.11.4-h8b12597_0 artifactory/external-conda-forge
libssh2: 1.10.0-ha56f1ee_2 artifactory/external-conda-forge
libstdcxx-devel_linux-64: 7.5.0-hb016644_20 artifactory/external-conda-forge
libstdcxx-ng: 12.1.0-ha89aaad_16 artifactory/external-conda-forge
libthrift: 0.13.0-h5aa387f_6 artifactory/external-conda-forge
libtiff: 4.2.0-hdc55705_0 artifactory/external-conda-forge
libuuid: 2.32.1-h7f98852_1000 artifactory/external-conda-forge
libwebp-base: 1.2.2-h7f98852_1 artifactory/external-conda-forge
libxcb: 1.13-h7f98852_1004 artifactory/external-conda-forge
libxml2: 2.9.9-h13577e0_2 artifactory/external-conda-forge
libzlib: 1.2.12-h166bdaf_1 artifactory/external-conda-forge
lz4-c: 1.9.3-h9c3ff4c_1 artifactory/external-conda-forge
make: 4.3-hd18ef5c_1 artifactory/external-conda-forge
ncurses: 6.3-h27087fc_1 artifactory/external-conda-forge
numpy: 1.22.4-py39hc58783e_0 artifactory/external-conda-forge
openssl: 1.1.1p-h166bdaf_0 artifactory/external-conda-forge
orc: 1.6.5-h973521d_1 artifactory/external-conda-anaconda
pango: 1.40.14-he7ab937_1005 artifactory/external-conda-forge
pcre: 8.45-h9c3ff4c_0 artifactory/external-conda-forge
pip: 22.1.2-pyhd8ed1ab_0 artifactory/external-conda-forge
pixman: 0.38.0-h516909a_1003 artifactory/external-conda-forge
pthread-stubs: 0.4-h36c2ea0_1001 artifactory/external-conda-forge
python: 3.9.13-h9a8a25e_0_cpython artifactory/external-conda-forge
python_abi: 3.9-2_cp39 artifactory/external-conda-forge
r-assertthat: 0.2.1-r35h6115d3f_1 artifactory/external-conda-forge
r-backports: 1.1.6-r35hcdcec82_1 artifactory/external-conda-forge
r-base: 3.5.1-h08e1455_1008 artifactory/external-conda-forge
r-bit: 1.1_15.2-r35hcdcec82_0 artifactory/external-conda-forge
r-bit64: 0.9_7-r35hcdcec82_1001 artifactory/external-conda-forge
r-cpp11: 0.4.2-r35h142f84f_0 artifactory/internal-conda-thirdparty
r-digest: 0.6.25-r35h0357c0b_1 artifactory/external-conda-forge
r-ellipsis: 0.3.0-r35hcdcec82_0 artifactory/external-conda-forge
r-glue: 1.4.0-r35hcdcec82_0 artifactory/external-conda-forge
r-magrittr: 1.5-r35h6115d3f_1002 artifactory/external-conda-forge
r-purrr: 0.3.4-r35hcdcec82_0 artifactory/external-conda-forge
r-r6: 2.4.1-r35h6115d3f_0 artifactory/external-conda-forge
r-rlang: 0.4.5-r35hcdcec82_2 artifactory/external-conda-forge
r-tidyselect: 1.0.0-r35h6115d3f_0 artifactory/external-conda-forge
r-vctrs: 0.2.4-r35hcdcec82_0 artifactory/external-conda-forge
r-zeallot: 0.1.0-r35h6115d3f_1001 artifactory/external-conda-forge
re2: 2022.06.01-h27087fc_0 artifactory/external-conda-forge
readline: 8.1.2-h0f457ee_0 artifactory/external-conda-forge
setuptools: 62.6.0-py39hf3d152e_0 artifactory/external-conda-forge
snappy: 1.1.9-hbd366e4_1 artifactory/external-conda-forge
sqlite: 3.38.5-h4ff8645_0 artifactory/external-conda-forge
sysroot_linux-64: 2.12-he073ed8_15 artifactory/external-conda-forge
tk: 8.6.12-h27826a3_0 artifactory/external-conda-forge
tktable: 2.10-hb7b940f_3 artifactory/external-conda-forge
tzdata: 2022a-h191b570_0 artifactory/external-conda-forge
uriparser: 0.9.5-h9c3ff4c_0 artifactory/external-conda-forge
utf8proc: 2.6.1-h27cfd23_0 artifactory/external-conda-anaconda
wheel: 0.37.1-pyhd8ed1ab_0 artifactory/external-conda-forge
xorg-kbproto: 1.0.7-h7f98852_1002 artifactory/external-conda-forge
xorg-libice: 1.0.10-h7f98852_0 artifactory/external-conda-forge
xorg-libsm: 1.2.3-hd9c2040_1000 artifactory/external-conda-forge
xorg-libx11: 1.7.2-h7f98852_0 artifactory/external-conda-forge
xorg-libxau: 1.0.9-h7f98852_0 artifactory/external-conda-forge
xorg-libxdmcp: 1.1.3-h7f98852_0 artifactory/external-conda-forge
xorg-libxext: 1.3.4-h7f98852_1 artifactory/external-conda-forge
xorg-libxrender: 0.9.10-h7f98852_1003 artifactory/external-conda-forge
xorg-renderproto: 0.11.1-h7f98852_1002 artifactory/external-conda-forge
xorg-xextproto: 7.3.0-h7f98852_1002 artifactory/external-conda-forge
xorg-xproto: 7.0.31-h7f98852_1007 artifactory/external-conda-forge
xz: 5.2.5-h516909a_1 artifactory/external-conda-forge
zlib: 1.2.12-h166bdaf_1 artifactory/external-conda-forge
zstd: 1.4.5-h9ceee32_0 artifactory/external-conda-anaconda
Test Step
## Package Plan ##
environment location: /home/coder/miniconda/conda-bld/r-arrow_1655925823577/_test_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold
The following NEW packages will be INSTALLED:
_libgcc_mutex: 0.1-conda_forge artifactory/external-conda-forge
_openmp_mutex: 4.5-2_gnu artifactory/external-conda-forge
_r-mutex: 1.0.1-anacondar_1 artifactory/external-conda-forge
abseil-cpp: 20211102.0-h27087fc_1 artifactory/external-conda-forge
arrow-cpp: 3.0.0-py310h5b2b108_54_cpu artifactory/external-conda-forge
aws-c-cal: 0.5.10-h3622835_0 artifactory/external-conda-forge
aws-c-common: 0.5.11-h7f98852_0 artifactory/external-conda-forge
aws-c-event-stream: 0.2.7-hd2d8ebb_9 artifactory/external-conda-forge
aws-c-io: 0.10.2-he6d800f_1 artifactory/external-conda-forge
aws-checksums: 0.1.11-hc0e0e8b_6 artifactory/external-conda-forge
aws-sdk-cpp: 1.8.186-h9ad65fb_2 artifactory/external-conda-forge
binutils_impl_linux-64: 2.34-h53a641e_7 artifactory/external-conda-forge
binutils_linux-64: 2.34-hc952b39_18 artifactory/external-conda-forge
bwidget: 1.9.14-ha770c72_1 artifactory/external-conda-forge
bzip2: 1.0.8-h7f98852_4 artifactory/external-conda-forge
c-ares: 1.18.1-h7f98852_0 artifactory/external-conda-forge
ca-certificates: 2022.6.15-ha878542_0 artifactory/external-conda-forge
cairo: 1.14.12-h8948797_3 artifactory/external-conda-anacondamain
curl: 7.76.1-h979ede3_1 artifactory/external-conda-forge
fontconfig: 2.13.0-h9420a91_0 artifactory/external-conda-anaconda
freetype: 2.10.4-h0708190_1 artifactory/external-conda-forge
fribidi: 1.0.10-h36c2ea0_0 artifactory/external-conda-forge
gcc_impl_linux-64: 7.3.0-habb00fd_1 artifactory/external-conda-anacondamain
gcc_linux-64: 7.3.0-h553295d_18 artifactory/external-conda-forge
gettext: 0.19.8.1-h0b5b191_1005 artifactory/external-conda-forge
gflags: 2.2.2-he1b5a44_1004 artifactory/external-conda-forge
gfortran_impl_linux-64: 7.3.0-hdf63c60_1 artifactory/external-conda-anaconda
gfortran_linux-64: 7.3.0-h553295d_18 artifactory/external-conda-forge
glib: 2.68.4-h9c3ff4c_0 artifactory/external-conda-forge
glib-tools: 2.68.4-h9c3ff4c_0 artifactory/external-conda-forge
glog: 0.6.0-h6f12383_0 artifactory/external-conda-forge
graphite2: 1.3.14-h23475e2_0 artifactory/external-conda-anaconda
grpc-cpp: 1.46.3-hc275302_1 artifactory/external-conda-forge
gsl: 2.4-h294904e_1006 artifactory/external-conda-forge
gxx_impl_linux-64: 7.3.0-hdf63c60_1 artifactory/external-conda-anaconda
gxx_linux-64: 7.3.0-h553295d_18 artifactory/external-conda-forge
harfbuzz: 2.8.1-h6f93f22_0 artifactory/external-conda-anaconda
icu: 58.2-hf484d3e_1000 artifactory/external-conda-forge
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krb5: 1.17.2-h926e7f8_0 artifactory/external-conda-forge
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