GraphAligner
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No alignment to de Bruijin Graph
I constructed a compacted de Brujin Graph from 10 genomes of 20k bp. The mutation on these genomes are artificial in such a way I imposed close muations.
The size of the smallest node in DBG is 31.
So my question: why it does not align the sequences on the graph unless we set the two parameters --seeds-minimizer-windowsize
and --seeds-minimizer-length
to be smaller than the distance of two successive mutations, however they are already smaller than the size of the smallest node in the graph.
Any clue?