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No alignment to de Bruijin Graph

Open khodor14 opened this issue 2 years ago • 0 comments

I constructed a compacted de Brujin Graph from 10 genomes of 20k bp. The mutation on these genomes are artificial in such a way I imposed close muations.

The size of the smallest node in DBG is 31.

So my question: why it does not align the sequences on the graph unless we set the two parameters --seeds-minimizer-windowsize and --seeds-minimizer-length to be smaller than the distance of two successive mutations, however they are already smaller than the size of the smallest node in the graph.

Any clue?

khodor14 avatar Apr 20 '22 13:04 khodor14