GA v1.0.13 segfault

[ptrebert]

Hi Mikko,

if you are interested, I can send you the data (a few gigs) behind this segfault if you want to debug this:

HG00733_3_Guppy_4.2.2_prom_MAP-TO_mbg-k5001-w2000.ms20000.ga.log:Signal 11. Read: 58648ef0-bc07-43fa-94b7-495b7161af3b. Seed: 495174-,2551,19,3745

Let me know if and how. Best

[wwliao]

I also meet the same issue when trying to align HiFi reads to a pangenome graph. 15 out of 47 jobs report something like: Signal 11. Read: m64043_191227_185626/65209118/ccs. Seed: 28207761+,6317,15,116

[maickrau]

The graph and the read would be very helpful if you could upload them somewhere

[wwliao]

I just sent you an email with a link to the data.