the make problem

[ghost]

Hello, when I use make command, some errors appearred, like [-Wsign-compare] and [-Wunused-variable] as following: "g++ -g -Wall -std=c++0x -c svlib.cpp svlib.cpp: In function ‘void findInnie(std::vector<mI>&, mI&)’: svlib.cpp:39:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while((mi.x2 > mums[i].x1) && (i<mums.size())) svlib.cpp:339:29: warning: unused variable ‘Dist’ [-Wunused-variable] double d1 =0, d2 =0, d = 0,Dist= 0,rd2=0,rd=0;" what should I do? Thanks for your attention.

[mahulchak]

I think those are just warnings. I don't see any error. I think svmu compiled. Try ./svmu in that directory

On Tue, Sep 15, 2020, 22:40 yellowq2019 [email protected] wrote:

Hello, when I use make command, some errors appearred, like [-Wsign-compare] and [-Wunused-variable] as following: "g++ -g -Wall -std=c++0x -c svlib.cpp svlib.cpp: In function ‘void findInnie(std::vector&, mI&)’: svlib.cpp:39:34: warning: comparison between signed and unsigned integer expressions [-Wsign-compare] while((mi.x2 > mums[i].x1) && (i<mums.size())) svlib.cpp:339:29: warning: unused variable ‘Dist’ [-Wunused-variable] double d1 =0, d2 =0, d = 0,Dist= 0,rd2=0,rd=0;" what should I do? Thanks for your attention.

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[ghost]

thanks a lot, yes, you are right, it has been complied, but when I run the following command "svmu ref_qry_ebv.delta refer.fasta contigs.fasta l ebv", it still printed the error as following: "terminate called after throwing an instance of 'std::logic_error' what(): basic_string::_M_construct null not valid Aborted (core dumped)"