quickmerge
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mahulchak
A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.
Hello @mahulchak , I checked anchor_summary.txt to see which contigs were merged. Then I found that the history merging a contig was not included in anchor_summary.txt, even though the contig...
Dear quickmerge teams, I have installed the latest quickmerge which could support mumer 4,but I was confused by the argument ```-l``` and ```-ml```， according the manual, >-l LENGTH_CUTOFF, --length_cutoff LENGTH_CUTOFF,which...
Hi , I am using two asseblies for one genome to quickmerge. The first one's size is 4Gb ， and its contigs number is 15k , the other's size is...
Hi, I want to use quickmerge with two assemblies A and B. If I understand right the merge genome will use the sequences from the query genome and try to...
Hi @mahulchak , We used quickmerge to merge a PacBio + Dovetail + Bionano (pb+dt+bn) scaffolds and a ONT assembly, I found that a 83290869bp scaffold got discarded in the...
Hi, For a high heter rate (> 2%) plant genome, I got a hybrid assembly (BUSCO C ~84% D ~26%) and a ONT(~30X) alone assembly (BUSCO C ~80% D ~14%)....
[root@localhost Quick1]# sh make_merger.sh g++ -O3 -Wall -o quickmerge quickmerge.cpp qmergelib.cpp -I. quickmerge.cpp:8:19: **fatal error: iostream: No such file or directory** #include ^ compilation terminated. qmergelib.cpp:1:19: **fatal error: iostream: No...
Hi, I am dealing with a large genome and therefore running quickmerge took a very long time, is there a way to run the quickmerge wrapper in multi-thread to accelerate...
I have multiple assemblies of hybrid and long-read sequencing. And its allowing me to run quickmerge on the output of quickmerge multiple times. I'm seeing increases in contig lengths and...
Hi, I met ERROR: mummer and/or mgaps returned non-zero problem. Could you please help? Here is the error message: ``` 1: PREPARING DATA 2,3: RUNNING mummer AND CREATING CLUSTERS #...
