UNI

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Availability of pretrained ABMIL on UNI features

1

Dear authors, would it be possible for you to share the pretrained (on UNI features) ABMIL model used in your experiments? Thanks for your work!

antalaszek

permission for pretrained weights

2

hello,nice work,when can I get the permission for the pretrained weights in huggingface,thanks

lingxitong

Weights are saved twice after running the walkthrough notebook: `models--MahmoodLab--UNI` and `models--MahmoodLab--uni`

2

Dear authors, I ran the [walkthrough notebook](https://github.com/mahmoodlab/UNI/blob/main/notebooks/uni_walkthrough.ipynb), and the model was downloaded twice (see screenshot). 1. I get the symbolic link `assets/ckpts/vit_large_patch16_224.dinov2.uni_mass100k/pytorch_model.bin` pointing to a file in `.cache/huggingface/hub/models--MahmoodLab--UNI/`. 2. The...

GeorgeBatch

Release trained model on SegPath data

1

Hello, Are you planning to release the trained model on SegPath data so that we can directly run inference on our samples?

abs51295

Hello, I was wondering if you could provide additional details on the evolution of loss functions during the pre-training of UNI. [It has indeed been observed ](https://github.com/facebookresearch/dinov2/issues/143)that instabilities or convergence...

afilt

Hello, thank you very much for your contribution. In your paper, you mentioned using the UNI pre-trained encoder to extract features from histopathology ROI, and also provided sample code. What...

rongyua

May I ask if you could provide the code for the tasks of ROI retrieval? Thank you for your great work!

wyhsleep

CLAM config for HunCRC slide data

1

Hello authors, Thank you for you amazing work. Can you publish the config of CLAM for extracting HunCRC data ? I can't extract, even with very low thresholds. `{'seg_params': {'seg_level':...

anhtienng

Dear authors, `faiss` is unnecessary for using the UNI model unless someone wants to use `uni/downstream/eval_patch_features/protonet.py` and the corresponding part of the walkthrough notebook. I added the link to the...

GeorgeBatch

How was figure 3e generated in the paper?

2

I used something similar to [this](https://github.com/huggingface/pytorch-image-models/discussions/1232) to extract the attention scores for the penultimate layer, as explained in the caption for figure 3e. However, I found that the attention maps...

AditMeh