Daniel Gómez-Sánchez
Daniel Gómez-Sánchez
After discussion in #3084, I offer myself to port the indel realignment pipeline. After exploring the GATK3 implementation, I will split the port in the following independent tasks: - [...
### VCF4.3 support New specifications for [VCF 4.3](http://samtools.github.io/hts-specs/VCFv4.3.pdf) suggest that a new `VCFCompoundHeaderLine` could be implemented for symbolic alternative alleles (`VCFAltHeaderLine`). New reserved keys are included in the specs, which...
### Description As described in #701, it will be nice to have a simple mechanism to write features in tribble not only for `VariantContext`. This is a port from one...
How can I cite the current specs? For instance, SAM was defined in http://bioinformatics.oxfordjournals.org/cgi/doi/10.1093/bioinformatics/btp352, but the specifications have changed a lot since them. In addition, the SAM tags definitions are...
Such feature would be great instead of requiring a call to `findAll` and create a new collection. Or maybe I am missing some other way to do so on an...
With the automatic testing performed on https://github.com/magicDGS-gaming/ygoprodeck-openapi, there are some issues with some schema: looks like the `level` property is set to `null` on a specific card. Checking the response,...
Hello. I am about to start a project using this API as a template to collect the data and I started generating an OpenAPI definition grabbing all possible information from...
One of my main usages of gem-mapper is to compute a mappability track, but I just found that it is removed in the latest commit to master. Is there any...
### What version of `starlight` are you using? 0.11.1 ### What version of `astro` are you using? 3.2.3 ### What package manager are you using? npm ### What operating system...
I would like to create an HDFS file with custom "dfs.blocksize". Is there any way to override the default block-size for a file before it is written? Thank you very...