Daniel Gómez-Sánchez
Daniel Gómez-Sánchez
Because you were interested in the open issue, can you have a look to this one, @lbergelson? It still needs #810 for simplify some code paths, but I think that...
No worries @lbergelson. I'm already using this code in another project, but I though that it would be nice to have support for this in HTSJDK. Whenever you have time...
Friendly ping here @lbergelson!
@jonn-smith - I rebased, and I hope that it works with the current implementation of bgzip, which changed a lot after I had the last look to this branch. Thanks...
I will work on this, but I found some related issues (#517, #500, #389, #277, #251, #250). Should I take into account that too, @droazen?
I believe that this is a picard issue and should be reported there. The gatk issue that you mention is closed because it was already fixed with the update of...
I could try it, but I would like to have a list of things that should be done for it.
An optional field with the checksum (md5 or other algorithm) can be also useful as a temporary solution until an `UUID` is added to BAM (and other formats)...
In addition to the length of the file as a quick check, what's about a checksum for the header and per-split (stored in the offset list)? This can be useful...
+1 to add an optional checksum (MD5 or a different one) It is true that per-offset checksum is overkill, but maybe only for the first and last split would be...