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orthofuser.mk run failure

Open peterdfields opened this issue 5 years ago • 1 comments

Hi @macmanes I'm trying to run orthofuser.mk on a set of transcriptomes (same species) that have been generated using the Oyster River Protocol (ORP). I'm running a docker container that has the most up-to-date version of ORP pulled from the master channel on an Ubuntu 18.04 server. The ORP generated transcriptomes were generated on the same container. Following renaming I tried to run the orthofuser.mk snakemake file, and the program runs for some time before failing. The error I receive isn't so revealing to me:

/home/orp/Oyster_River_Protocol/orthofuser.mk:68: recipe for target '/home/orp/assemblies/merge.orthomerged.fasta' failed
make: *** [/home/orp/assemblies/merge.orthomerged.fasta] Error 1

Please let me know if any additional info might be useful for determining why the script is failing.

peterdfields avatar Apr 25 '20 23:04 peterdfields

Hi @macmanes, Any solution for this. I have tried running orthofuser too for all the versions and its not working. It is still requseting for orp_v2 instalation and py27...is this the old version. What should be changed?

thanks, Eric

erickmikwa avatar May 14 '20 13:05 erickmikwa