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Autogenerate shell auto-completion scripts

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As noted in the docs[1], third-party software vendors should install completion files into a different dir than upstream fish-shell to avoid conflicts. Docs suggest `/usr/share/fish/vendor_completions.d`. This isn't an issue here...

Hello, is there much scope for creating conditional auto-complete options based on subcommands? i.e I have one command (samtools) that has two subcommands (dict and faidx) each with different options:...