MVRegFus

MVRegFus copied to clipboard

RL does not use transpose when calculating correct

1

Hi Marvin Great talking to you last night. As I mentioned I was wondering if the RL code takes the transpose of the forward model when calculating the correction [here](https://github.com/m-albert/MVRegFus/blob/stitching_nd/mvregfus/multiview.py#L5704)...

bnorthan

Fusion of single-view data?

7

Hi all, Super exciting to find this project! We are acquiring large light sheet data sets using a high NA oblique plane microscope ([publication](https://elifesciences.org/articles/57681)). We normally use BigStitcher to stitch...

dpshepherd

Getting in touch

1

Hi Marvin, I didn't know a better way to contact you, but I'd love to talk more about this registration code. I have built some very similar tools using dask...

GFleishman

Added jupyter notebook to make parameter specification and running of the fusion easier

2

Changed `mvregfus_run.py` such that now fusion parameters and paths are specified in a separate jupyter notebook, where they are exported as config file (.json). `mvregfus_run.py` now only contains functions that...

max-brambach

Fusion crashes for very large images

2

Hi, When I try to fuse very large images (4 volumes with 4 views each consisting of ~600x2000x2000px; ca. 40GB) I get a Memory Allocation Error. When I use smaller...

max-brambach

Reading in non-CZI data

1

We also have a second, but separate question. We typically save our data as TIFFs and then convert to the BigDataViewer (BDV) H5 format, using [npy2bdv](https://github.com/nvladimus/npy2bdv). Since we can read...

dpshepherd