lyjps
struct2map cannot work well
’predicted_protein_struct2map.py‘ seems some thing wrong? it can't calculate the distance of residues.
In my work, it functions properly. Please note that our approach does not involve calculating the relative distances and retaining every amino acid residue. Instead, it assesses whether amino acid residues are connected based on the distance set during initialization. The final result preserves all edges in the protein contact map, as demonstrated in the format of 'protein_contact_map' in the 'Source_Data'.
Hello, I have saw the 'protein_contact_map' files such as:A0A0A0MRZ7.txt which maybe the result of predicted_protein_struct2map.py. The reason I found seems to be that here can only handle the PDB files in the Alphafold database. The PDB of the PDB database cannot work well