Run sample.py failed: OSError: libc10_cuda.so: cannot open shared object file: No such file or directory

[zyx5256]

--------------------------------------------- Error Information --------------------------------------

(SBDD-3D) root@10-90-43-152:/home/jenkins/zhuyuxiao/SBDD_Project/3D-Generative-SBDD# python sample.py ./configs/sample.yml --data_id {i} Traceback (most recent call last): File "sample.py", line 7, in from torch_geometric.data import Batch File "/home/miniconda3/envs/SBDD-3D/lib/python3.8/site-packages/torch_geometric/init.py", line 4, in import torch_geometric.data File "/home/miniconda3/envs/SBDD-3D/lib/python3.8/site-packages/torch_geometric/data/init.py", line 1, in from .data import Data File "/home/miniconda3/envs/SBDD-3D/lib/python3.8/site-packages/torch_geometric/data/data.py", line 3, in from torch_geometric.typing import OptTensor, NodeType, EdgeType File "/home/miniconda3/envs/SBDD-3D/lib/python3.8/site-packages/torch_geometric/typing.py", line 4, in from torch_sparse import SparseTensor File "/home/miniconda3/envs/SBDD-3D/lib/python3.8/site-packages/torch_sparse/init.py", line 19, in torch.ops.load_library(spec.origin) File "/home/miniconda3/envs/SBDD-3D/lib/python3.8/site-packages/torch/_ops.py", line 110, in load_library ctypes.CDLL(path) File "/home/miniconda3/envs/SBDD-3D/lib/python3.8/ctypes/init.py", line 373, in init self._handle = _dlopen(self._name, mode) OSError: libc10_cuda.so: cannot open shared object file: No such file or directory

--------------------------------------------- My Conda Env --------------------------------------

packages in environment at /home/miniconda3/envs/SBDD-3D:

Name Version Build Channel _libgcc_mutex 0.1 conda_forge conda-forge _openmp_mutex 4.5 2_gnu conda-forge absl-py 1.0.0 pyhd8ed1ab_0 conda-forge aiohttp 3.7.4.post0 py38h497a2fe_0 conda-forge async-timeout 3.0.1 py_1000 conda-forge attrs 21.4.0 pyhd8ed1ab_0 conda-forge biopython 1.79 py38h497a2fe_0 conda-forge blas 1.0 mkl conda-forge blinker 1.4 py_1 conda-forge boost 1.74.0 py38hc10631b_3 conda-forge boost-cpp 1.74.0 h9359b55_0 conda-forge brotlipy 0.7.0 py38h497a2fe_1001 conda-forge bzip2 1.0.8 h7f98852_4 conda-forge c-ares 1.18.1 h7f8727e_0 defaults ca-certificates 2022.07.19 h06a4308_0 defaults cachetools 4.2.4 pyhd8ed1ab_0 conda-forge cairo 1.16.0 h3fc0475_1005 conda-forge certifi 2022.6.15 py38h578d9bd_0 conda-forge cffi 1.14.6 py38ha65f79e_0 conda-forge chardet 4.0.0 py38h578d9bd_3 conda-forge charset-normalizer 2.0.10 pyhd8ed1ab_0 conda-forge click 8.0.3 py38h578d9bd_1 conda-forge colorama 0.4.4 pyh9f0ad1d_0 conda-forge cpuonly 2.0 0 pytorch cryptography 35.0.0 py38ha5dfef3_0 conda-forge cudatoolkit 11.3.1 h2bc3f7f_2 defaults cycler 0.11.0 pyhd8ed1ab_0 conda-forge dataclasses 0.8 pyhc8e2a94_3 conda-forge decorator 4.4.2 py_0 conda-forge easydict 1.9 py_0 conda-forge ffmpeg 4.3 hf484d3e_0 pytorch fontconfig 2.13.1 hba837de_1005 conda-forge freetype 2.11.0 h70c0345_0 defaults gettext 0.19.8.1 h0b5b191_1005 conda-forge giflib 5.2.1 h36c2ea0_2 conda-forge glib 2.69.1 h4ff587b_1 defaults gmp 6.2.1 h58526e2_0 conda-forge gnutls 3.6.15 he1e5248_0 defaults google-auth 2.3.3 pyh6c4a22f_0 conda-forge google-auth-oauthlib 0.4.6 pyhd8ed1ab_0 conda-forge googledrivedownloader 0.4 pyhd3deb0d_1 conda-forge grpcio 1.42.0 py38hce63b2e_0 defaults icu 67.1 he1b5a44_0 conda-forge idna 3.1 pyhd3deb0d_0 conda-forge importlib-metadata 4.10.0 py38h578d9bd_0 conda-forge intel-openmp 2021.4.0 h06a4308_3561 defaults jinja2 3.0.3 pyhd8ed1ab_0 conda-forge joblib 1.1.0 pyhd8ed1ab_0 conda-forge jpeg 9d h36c2ea0_0 conda-forge kiwisolver 1.3.1 py38h1fd1430_1 conda-forge lame 3.100 h7f98852_1001 conda-forge lcms2 2.12 hddcbb42_0 conda-forge ld_impl_linux-64 2.35.1 hea4e1c9_2 conda-forge libffi 3.3 h58526e2_2 conda-forge libgcc-ng 12.1.0 h8d9b700_16 conda-forge libgfortran-ng 7.5.0 h14aa051_20 conda-forge libgfortran4 7.5.0 h14aa051_20 conda-forge libgomp 12.1.0 h8d9b700_16 conda-forge libiconv 1.15 h516909a_1006 conda-forge libidn2 2.3.2 h7f98852_0 conda-forge libpng 1.6.37 h21135ba_2 conda-forge libprotobuf 3.15.8 h780b84a_0 conda-forge libstdcxx-ng 9.3.0 h6de172a_19 conda-forge libtasn1 4.16.0 h27cfd23_0 defaults libtiff 4.2.0 hbd63e13_2 conda-forge libunistring 0.9.10 h7f98852_0 conda-forge libuuid 2.32.1 h7f98852_1000 conda-forge libuv 1.40.0 h7f98852_0 conda-forge libwebp 1.2.0 h3452ae3_0 conda-forge libwebp-base 1.2.0 h7f98852_2 conda-forge libxcb 1.13 h7f98852_1003 conda-forge libxml2 2.9.10 h72b56ed_2 conda-forge libzlib 1.2.11 h36c2ea0_1013 conda-forge lz4-c 1.9.3 h9c3ff4c_1 conda-forge markdown 3.3.6 pyhd8ed1ab_0 conda-forge markupsafe 2.0.1 py38h497a2fe_0 conda-forge matplotlib-base 3.3.4 py38h0efea84_0 conda-forge mkl 2021.4.0 h06a4308_640 defaults mkl-service 2.4.0 py38h497a2fe_0 conda-forge mkl_fft 1.3.1 py38hd3c417c_0 defaults mkl_random 1.2.2 py38h1abd341_0 conda-forge multidict 5.2.0 py38h7f8727e_2 defaults ncurses 6.3 h7f8727e_2 defaults nettle 3.7.3 hbbd107a_1 defaults networkx 2.5.1 pyhd8ed1ab_0 conda-forge numpy 1.21.2 py38h20f2e39_0 defaults numpy-base 1.21.2 py38h79a1101_0 defaults oauthlib 3.1.1 pyhd8ed1ab_0 conda-forge olefile 0.46 pyh9f0ad1d_1 conda-forge openbabel 3.1.1 py38hf4b5c11_1 conda-forge openh264 2.1.1 h780b84a_0 conda-forge openssl 1.1.1q h166bdaf_0 conda-forge pandas 1.2.5 py38h1abd341_0 conda-forge pcre 8.45 h9c3ff4c_0 conda-forge pillow 8.4.0 py38h5aabda8_0 defaults pip 21.2.4 pyhd8ed1ab_0 conda-forge pixman 0.38.0 h516909a_1003 conda-forge protobuf 3.15.8 py38h709712a_0 conda-forge pthread-stubs 0.4 h36c2ea0_1001 conda-forge pyasn1 0.4.8 py_0 conda-forge pyasn1-modules 0.2.7 py_0 conda-forge pycairo 1.20.1 py38hf61ee4a_0 conda-forge pycparser 2.21 pyhd8ed1ab_0 conda-forge pyg 2.0.3 py38_torch_1.10.0_cpu pyg pyjwt 2.3.0 pyhd8ed1ab_1 conda-forge pyopenssl 21.0.0 pyhd8ed1ab_0 conda-forge pyparsing 3.0.6 pyhd8ed1ab_0 conda-forge pysocks 1.7.1 py38h578d9bd_5 conda-forge python 3.8.12 h12debd9_0 defaults python-dateutil 2.8.2 pyhd8ed1ab_0 conda-forge python-lmdb 0.99 py38h709712a_0 conda-forge python-louvain 0.15 pyhd8ed1ab_1 conda-forge python_abi 3.8 2_cp38 conda-forge pytorch 1.10.1 py3.8_cpu_0 pytorch pytorch-cluster 1.5.9 py38_torch_1.10.0_cu113 pyg pytorch-mutex 1.0 cpu pytorch pytorch-scatter 2.0.9 py38_torch_1.10.0_cu113 pyg pytorch-sparse 0.6.12 py38_torch_1.10.0_cu113 pyg pytorch-spline-conv 1.2.1 py38_torch_1.10.0_cu113 pyg pytz 2021.3 pyhd8ed1ab_0 conda-forge pyu2f 0.1.5 pyhd8ed1ab_0 conda-forge pyyaml 5.4.1 py38h497a2fe_0 conda-forge rdkit 2020.09.5 py38h2bca085_0 conda-forge readline 8.1.2 h7f8727e_1 defaults reportlab 3.5.68 py38hadf75a6_0 conda-forge requests 2.27.1 pyhd8ed1ab_0 conda-forge requests-oauthlib 1.3.0 pyh9f0ad1d_0 conda-forge rsa 4.8 pyhd8ed1ab_0 conda-forge scikit-learn 1.0.2 py38h51133e4_1 defaults scipy 1.7.3 py38hc147768_0 defaults setuptools 58.0.4 py38h578d9bd_2 conda-forge six 1.16.0 pyh6c4a22f_0 conda-forge sqlalchemy 1.3.23 py38h497a2fe_0 conda-forge sqlite 3.37.0 hc218d9a_0 defaults tensorboard 2.7.0 pyhd8ed1ab_0 conda-forge tensorboard-data-server 0.6.0 py38h2b97feb_0 conda-forge tensorboard-plugin-wit 1.8.1 pyhd8ed1ab_0 conda-forge threadpoolctl 3.0.0 pyh8a188c0_0 conda-forge tk 8.6.11 h21135ba_0 conda-forge torchaudio 0.10.1 py38_cu113 pytorch torchvision 0.11.2 py38_cu113 pytorch tornado 6.1 py38h497a2fe_1 conda-forge tqdm 4.62.3 pyhd8ed1ab_0 conda-forge typing-extensions 3.10.0.2 hd8ed1ab_0 conda-forge typing_extensions 3.10.0.2 pyha770c72_0 conda-forge urllib3 1.26.8 pyhd8ed1ab_1 conda-forge werkzeug 2.0.1 pyhd8ed1ab_0 conda-forge wheel 0.37.1 pyhd8ed1ab_0 conda-forge xorg-kbproto 1.0.7 h7f98852_1002 conda-forge xorg-libice 1.0.10 h7f98852_0 conda-forge xorg-libsm 1.2.3 hd9c2040_1000 conda-forge xorg-libx11 1.7.2 h7f98852_0 conda-forge xorg-libxau 1.0.9 h7f98852_0 conda-forge xorg-libxdmcp 1.1.3 h7f98852_0 conda-forge xorg-libxext 1.3.4 h7f98852_1 conda-forge xorg-libxrender 0.9.10 h7f98852_1003 conda-forge xorg-renderproto 0.11.1 h7f98852_1002 conda-forge xorg-xextproto 7.3.0 h7f98852_1002 conda-forge xorg-xproto 7.0.31 h7f98852_1007 conda-forge xz 5.2.5 h516909a_1 conda-forge yacs 0.1.6 py_0 conda-forge yaml 0.2.5 h516909a_0 conda-forge yarl 1.6.3 py38h497a2fe_2 conda-forge zipp 3.7.0 pyhd8ed1ab_1 conda-forge zlib 1.2.11 h36c2ea0_1013 conda-forge zstd 1.4.9 ha95c52a_0 conda-forge